Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 AC005082.1-201ENST00000413042 2259 ntBASIC15.42■□□□□ 0.06
CX3CL1P78423 AC093484.2-201ENST00000580996 2166 ntBASIC15.42■□□□□ 0.06
CX3CL1P78423 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CX3CL1P78423 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.42■□□□□ 0.06
CX3CL1P78423 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC15.42■□□□□ 0.06
CX3CL1P78423 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.42■□□□□ 0.06
CX3CL1P78423 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.42■□□□□ 0.06
CX3CL1P78423 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC15.42■□□□□ 0.06
CX3CL1P78423 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
CX3CL1P78423 RPPH1-201ENST00000516869 333 ntBASIC15.42■□□□□ 0.06
CX3CL1P78423 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC15.42■□□□□ 0.06
CX3CL1P78423 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.42■□□□□ 0.06
CX3CL1P78423 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.42■□□□□ 0.06
CX3CL1P78423 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC15.42■□□□□ 0.06
CX3CL1P78423 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15.42■□□□□ 0.06
CX3CL1P78423 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CX3CL1P78423 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC15.41■□□□□ 0.06
CX3CL1P78423 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.41■□□□□ 0.06
CX3CL1P78423 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.41■□□□□ 0.06
CX3CL1P78423 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC15.41■□□□□ 0.06
CX3CL1P78423 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
CX3CL1P78423 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CX3CL1P78423 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC15.41■□□□□ 0.06
CX3CL1P78423 KRT16P5-201ENST00000455284 522 ntBASIC15.41■□□□□ 0.06
CX3CL1P78423 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CX3CL1P78423 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CX3CL1P78423 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.41■□□□□ 0.06
CX3CL1P78423 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.41■□□□□ 0.06
CX3CL1P78423 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CX3CL1P78423 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CX3CL1P78423 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CX3CL1P78423 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC15.4■□□□□ 0.06
CX3CL1P78423 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 PRORSD1P-201ENST00000295112 541 ntBASIC15.4■□□□□ 0.06
CX3CL1P78423 ABHD17AP1-201ENST00000358206 933 ntBASIC15.4■□□□□ 0.06
CX3CL1P78423 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CX3CL1P78423 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC15.4■□□□□ 0.06
CX3CL1P78423 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.4■□□□□ 0.06
CX3CL1P78423 RNF121-214ENST00000533380 870 ntTSL 3 BASIC15.4■□□□□ 0.06
CX3CL1P78423 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.4■□□□□ 0.06
CX3CL1P78423 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.4■□□□□ 0.06
CX3CL1P78423 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
CX3CL1P78423 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.4■□□□□ 0.06
CX3CL1P78423 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CX3CL1P78423 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CX3CL1P78423 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.4■□□□□ 0.06
CX3CL1P78423 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms