Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LSM3P62310 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.27■□□□□ 0.35
LSM3P62310 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.27■□□□□ 0.35
LSM3P62310 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.27■□□□□ 0.35
LSM3P62310 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.27■□□□□ 0.35
LSM3P62310 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 MKRN4P-201ENST00000444706 1521 ntBASIC17.26■□□□□ 0.35
LSM3P62310 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.26■□□□□ 0.35
LSM3P62310 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.26■□□□□ 0.35
LSM3P62310 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
LSM3P62310 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.26■□□□□ 0.35
LSM3P62310 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC17.26■□□□□ 0.35
LSM3P62310 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.26■□□□□ 0.35
LSM3P62310 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.26■□□□□ 0.35
LSM3P62310 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
LSM3P62310 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LSM3P62310 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.26■□□□□ 0.35
LSM3P62310 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
LSM3P62310 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LSM3P62310 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LSM3P62310 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.25■□□□□ 0.35
LSM3P62310 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.25■□□□□ 0.35
LSM3P62310 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LSM3P62310 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 AC105265.2-201ENST00000467189 838 ntBASIC17.25■□□□□ 0.35
LSM3P62310 AC079140.4-201ENST00000507448 529 ntBASIC17.25■□□□□ 0.35
LSM3P62310 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.25■□□□□ 0.35
LSM3P62310 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.25■□□□□ 0.35
LSM3P62310 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
LSM3P62310 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM3P62310 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
LSM3P62310 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LSM3P62310 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LSM3P62310 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.24■□□□□ 0.35
LSM3P62310 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LSM3P62310 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.24■□□□□ 0.35
LSM3P62310 PGM5P4-201ENST00000421970 445 ntBASIC17.24■□□□□ 0.35
LSM3P62310 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.24■□□□□ 0.35
LSM3P62310 AC010141.2-201ENST00000452426 721 ntBASIC17.24■□□□□ 0.35
LSM3P62310 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 AC008764.7-201ENST00000593779 1081 ntBASIC17.24■□□□□ 0.35
LSM3P62310 TNRC18P3-201ENST00000441896 2691 ntBASIC17.24■□□□□ 0.35
LSM3P62310 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LSM3P62310 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LSM3P62310 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
LSM3P62310 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LSM3P62310 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
LSM3P62310 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.24■□□□□ 0.35
LSM3P62310 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.24■□□□□ 0.35
LSM3P62310 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.24■□□□□ 0.35
LSM3P62310 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM3P62310 AC008764.6-201ENST00000595909 2069 ntBASIC17.24■□□□□ 0.35
LSM3P62310 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.24■□□□□ 0.35
LSM3P62310 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LSM3P62310 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.23■□□□□ 0.35
LSM3P62310 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
LSM3P62310 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms