Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 LINC02228-203ENST00000641970 1355 ntBASIC13.38□□□□□ -0.27
CKS1BP61024 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC13.38□□□□□ -0.27
CKS1BP61024 IRS3P-201ENST00000223076 1006 ntBASIC13.38□□□□□ -0.27
CKS1BP61024 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC13.38□□□□□ -0.27
CKS1BP61024 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CKS1BP61024 RHOF-204ENST00000537265 699 ntTSL 2 BASIC13.38□□□□□ -0.27
CKS1BP61024 KRT18P20-201ENST00000548986 1279 ntBASIC13.38□□□□□ -0.27
CKS1BP61024 SLC7A5P2-201ENST00000553010 536 ntBASIC13.38□□□□□ -0.27
CKS1BP61024 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC13.38□□□□□ -0.27
CKS1BP61024 AC142381.2-201ENST00000566120 298 ntBASIC13.38□□□□□ -0.27
CKS1BP61024 AC110285.6-201ENST00000617652 491 ntBASIC13.38□□□□□ -0.27
CKS1BP61024 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CKS1BP61024 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC13.38□□□□□ -0.27
CKS1BP61024 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CKS1BP61024 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC13.38□□□□□ -0.27
CKS1BP61024 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CKS1BP61024 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CKS1BP61024 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CKS1BP61024 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC13.37□□□□□ -0.27
CKS1BP61024 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CKS1BP61024 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC13.37□□□□□ -0.27
CKS1BP61024 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CKS1BP61024 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC13.37□□□□□ -0.27
CKS1BP61024 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC13.37□□□□□ -0.27
CKS1BP61024 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 TESC-206ENST00000541210 936 ntTSL 3 BASIC13.37□□□□□ -0.27
CKS1BP61024 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CKS1BP61024 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC13.37□□□□□ -0.27
CKS1BP61024 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 CD37-204ENST00000535669 1674 ntTSL 2 BASIC13.37□□□□□ -0.27
CKS1BP61024 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CKS1BP61024 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CKS1BP61024 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.37□□□□□ -0.27
CKS1BP61024 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CKS1BP61024 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
CKS1BP61024 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CKS1BP61024 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC13.36□□□□□ -0.27
CKS1BP61024 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CKS1BP61024 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC13.36□□□□□ -0.27
CKS1BP61024 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
CKS1BP61024 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CKS1BP61024 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.36□□□□□ -0.27
CKS1BP61024 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC13.36□□□□□ -0.27
CKS1BP61024 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC13.36□□□□□ -0.27
CKS1BP61024 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CKS1BP61024 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CKS1BP61024 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC13.36□□□□□ -0.27
CKS1BP61024 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CKS1BP61024 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms