Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN1P58418 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN1P58418 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CLRN1P58418 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN1P58418 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN1P58418 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN1P58418 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.11■□□□□ 0.33
CLRN1P58418 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CLRN1P58418 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.11■□□□□ 0.33
CLRN1P58418 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 AP000974.1-201ENST00000623909 2387 ntBASIC17.11■□□□□ 0.33
CLRN1P58418 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN1P58418 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN1P58418 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
CLRN1P58418 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLRN1P58418 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLRN1P58418 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 KRT18P29-201ENST00000397031 1267 ntBASIC17.1■□□□□ 0.33
CLRN1P58418 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 TSPY20P-201ENST00000450910 630 ntBASIC17.1■□□□□ 0.33
CLRN1P58418 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.1■□□□□ 0.33
CLRN1P58418 AL160286.2-201ENST00000567150 934 ntBASIC17.1■□□□□ 0.33
CLRN1P58418 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.1■□□□□ 0.33
CLRN1P58418 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CLRN1P58418 HLA-A-209ENST00000638375 975 ntBASIC17.1■□□□□ 0.33
CLRN1P58418 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.1■□□□□ 0.33
CLRN1P58418 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.1■□□□□ 0.33
CLRN1P58418 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN1P58418 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CLRN1P58418 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLRN1P58418 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CLRN1P58418 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLRN1P58418 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.09■□□□□ 0.33
CLRN1P58418 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.09■□□□□ 0.33
CLRN1P58418 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN1P58418 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLRN1P58418 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.09■□□□□ 0.33
CLRN1P58418 FAM197Y4-202ENST00000622692 608 ntBASIC17.09■□□□□ 0.33
CLRN1P58418 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN1P58418 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN1P58418 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN1P58418 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.09■□□□□ 0.33
CLRN1P58418 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.09■□□□□ 0.33
CLRN1P58418 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN1P58418 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN1P58418 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CLRN1P58418 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN1P58418 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms