Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VSX2P58304 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VSX2P58304 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.33■□□□□ 0.53
VSX2P58304 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.33■□□□□ 0.53
VSX2P58304 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.33■□□□□ 0.53
VSX2P58304 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VSX2P58304 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.33■□□□□ 0.53
VSX2P58304 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VSX2P58304 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VSX2P58304 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VSX2P58304 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VSX2P58304 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VSX2P58304 AC211429.1-201ENST00000415277 523 ntBASIC18.33■□□□□ 0.52
VSX2P58304 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.33■□□□□ 0.52
VSX2P58304 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.33■□□□□ 0.52
VSX2P58304 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.33■□□□□ 0.52
VSX2P58304 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
VSX2P58304 AC133561.5-201ENST00000635547 218 ntBASIC18.33■□□□□ 0.52
VSX2P58304 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.33■□□□□ 0.52
VSX2P58304 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VSX2P58304 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VSX2P58304 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.33■□□□□ 0.52
VSX2P58304 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
VSX2P58304 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VSX2P58304 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.33■□□□□ 0.52
VSX2P58304 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
VSX2P58304 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.33■□□□□ 0.52
VSX2P58304 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VSX2P58304 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VSX2P58304 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.32■□□□□ 0.52
VSX2P58304 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VSX2P58304 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.32■□□□□ 0.52
VSX2P58304 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.32■□□□□ 0.52
VSX2P58304 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.32■□□□□ 0.52
VSX2P58304 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.32■□□□□ 0.52
VSX2P58304 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.32■□□□□ 0.52
VSX2P58304 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
VSX2P58304 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.32■□□□□ 0.52
VSX2P58304 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VSX2P58304 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
VSX2P58304 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VSX2P58304 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.31■□□□□ 0.52
VSX2P58304 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX2P58304 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX2P58304 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.31■□□□□ 0.52
VSX2P58304 ECEL1P3-201ENST00000427961 737 ntBASIC18.31■□□□□ 0.52
VSX2P58304 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.31■□□□□ 0.52
VSX2P58304 MFAP1P1-201ENST00000442257 1255 ntBASIC18.31■□□□□ 0.52
VSX2P58304 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.31■□□□□ 0.52
VSX2P58304 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX2P58304 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.31■□□□□ 0.52
VSX2P58304 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
VSX2P58304 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.31■□□□□ 0.52
VSX2P58304 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
VSX2P58304 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VSX2P58304 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VSX2P58304 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.3■□□□□ 0.52
VSX2P58304 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX2P58304 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX2P58304 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX2P58304 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.3■□□□□ 0.52
VSX2P58304 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.3■□□□□ 0.52
VSX2P58304 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.3■□□□□ 0.52
VSX2P58304 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX2P58304 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VSX2P58304 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX2P58304 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VSX2P58304 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX2P58304 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.3■□□□□ 0.52
VSX2P58304 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX2P58304 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.3■□□□□ 0.52
VSX2P58304 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.3■□□□□ 0.52
VSX2P58304 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VSX2P58304 AP005242.2-201ENST00000580065 1175 ntBASIC18.3■□□□□ 0.52
VSX2P58304 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.3■□□□□ 0.52
VSX2P58304 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.3■□□□□ 0.52
VSX2P58304 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms