Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 KRT8P9-201ENST00000558927 1449 ntBASIC21.12■□□□□ 0.97
PEX3P56589 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.11■□□□□ 0.97
PEX3P56589 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
PEX3P56589 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 TSPY21P-201ENST00000433481 731 ntBASIC21.11■□□□□ 0.97
PEX3P56589 MFAP1P1-201ENST00000442257 1255 ntBASIC21.11■□□□□ 0.97
PEX3P56589 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.11■□□□□ 0.97
PEX3P56589 AC073912.3-201ENST00000624414 853 ntBASIC21.11■□□□□ 0.97
PEX3P56589 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.11■□□□□ 0.97
PEX3P56589 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.11■□□□□ 0.97
PEX3P56589 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PEX3P56589 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.1■□□□□ 0.97
PEX3P56589 AC096733.2-201ENST00000609937 1394 ntBASIC21.1■□□□□ 0.97
PEX3P56589 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
PEX3P56589 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.1■□□□□ 0.97
PEX3P56589 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
PEX3P56589 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.1■□□□□ 0.97
PEX3P56589 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
PEX3P56589 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.1■□□□□ 0.97
PEX3P56589 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.1■□□□□ 0.97
PEX3P56589 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.1■□□□□ 0.97
PEX3P56589 AP005242.2-201ENST00000580065 1175 ntBASIC21.1■□□□□ 0.97
PEX3P56589 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.1■□□□□ 0.97
PEX3P56589 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.1■□□□□ 0.97
PEX3P56589 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.1■□□□□ 0.97
PEX3P56589 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PEX3P56589 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PEX3P56589 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.09■□□□□ 0.97
PEX3P56589 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.09■□□□□ 0.97
PEX3P56589 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
PEX3P56589 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.09■□□□□ 0.97
PEX3P56589 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 AC087499.1-201ENST00000418141 1075 ntBASIC21.09■□□□□ 0.97
PEX3P56589 CKBP1-201ENST00000565489 1086 ntBASIC21.09■□□□□ 0.97
PEX3P56589 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.09■□□□□ 0.97
PEX3P56589 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.09■□□□□ 0.97
PEX3P56589 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.09■□□□□ 0.97
PEX3P56589 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
PEX3P56589 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.09■□□□□ 0.97
PEX3P56589 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PEX3P56589 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.09■□□□□ 0.97
PEX3P56589 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.08■□□□□ 0.97
PEX3P56589 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PEX3P56589 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.08■□□□□ 0.97
PEX3P56589 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PEX3P56589 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PEX3P56589 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.08■□□□□ 0.97
PEX3P56589 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.08■□□□□ 0.97
PEX3P56589 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PEX3P56589 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.08■□□□□ 0.97
PEX3P56589 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PEX3P56589 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PEX3P56589 PRSS44-201ENST00000515154 1146 ntBASIC21.08■□□□□ 0.97
PEX3P56589 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.08■□□□□ 0.97
PEX3P56589 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.08■□□□□ 0.97
PEX3P56589 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PEX3P56589 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PEX3P56589 AC141586.3-201ENST00000562166 1838 ntBASIC21.08■□□□□ 0.96
PEX3P56589 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.08■□□□□ 0.96
PEX3P56589 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
PEX3P56589 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.08■□□□□ 0.96
PEX3P56589 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PEX3P56589 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PEX3P56589 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms