Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
MSX2P35548 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.28■□□□□ 0.52
MSX2P35548 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.28■□□□□ 0.52
MSX2P35548 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.28■□□□□ 0.52
MSX2P35548 AC005837.3-201ENST00000612163 286 ntBASIC18.28■□□□□ 0.52
MSX2P35548 AC100791.3-201ENST00000617619 330 ntBASIC18.28■□□□□ 0.52
MSX2P35548 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.28■□□□□ 0.52
MSX2P35548 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX2P35548 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
MSX2P35548 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
MSX2P35548 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.28■□□□□ 0.52
MSX2P35548 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
MSX2P35548 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.27■□□□□ 0.52
MSX2P35548 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.27■□□□□ 0.52
MSX2P35548 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.27■□□□□ 0.52
MSX2P35548 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.27■□□□□ 0.52
MSX2P35548 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.27■□□□□ 0.52
MSX2P35548 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 AC023632.3-201ENST00000521633 145 ntBASIC18.27■□□□□ 0.52
MSX2P35548 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.27■□□□□ 0.52
MSX2P35548 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.27■□□□□ 0.52
MSX2P35548 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
MSX2P35548 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSX2P35548 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MSX2P35548 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
MSX2P35548 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MSX2P35548 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
MSX2P35548 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.27■□□□□ 0.51
MSX2P35548 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MSX2P35548 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 AC116351.2-201ENST00000606540 1585 ntBASIC18.26■□□□□ 0.51
MSX2P35548 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.26■□□□□ 0.51
MSX2P35548 AC007322.4-201ENST00000509611 723 ntBASIC18.26■□□□□ 0.51
MSX2P35548 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.26■□□□□ 0.51
MSX2P35548 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.26■□□□□ 0.51
MSX2P35548 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
MSX2P35548 AC013268.1-206ENST00000638368 961 ntBASIC18.26■□□□□ 0.51
MSX2P35548 AC112229.1-201ENST00000639295 961 ntBASIC18.26■□□□□ 0.51
MSX2P35548 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.26■□□□□ 0.51
MSX2P35548 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
MSX2P35548 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
MSX2P35548 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSX2P35548 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.25■□□□□ 0.51
MSX2P35548 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.25■□□□□ 0.51
MSX2P35548 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.25■□□□□ 0.51
MSX2P35548 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms