Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AP003071.4-201ENST00000562276 1284 ntBASIC18.76■□□□□ 0.59
SHMT2P34897 AL160286.2-201ENST00000567150 934 ntBASIC18.76■□□□□ 0.59
SHMT2P34897 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.76■□□□□ 0.59
SHMT2P34897 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
SHMT2P34897 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SHMT2P34897 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.75■□□□□ 0.59
SHMT2P34897 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.75■□□□□ 0.59
SHMT2P34897 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.75■□□□□ 0.59
SHMT2P34897 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.75■□□□□ 0.59
SHMT2P34897 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.75■□□□□ 0.59
SHMT2P34897 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.75■□□□□ 0.59
SHMT2P34897 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.75■□□□□ 0.59
SHMT2P34897 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SHMT2P34897 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.75■□□□□ 0.59
SHMT2P34897 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.75■□□□□ 0.59
SHMT2P34897 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.75■□□□□ 0.59
SHMT2P34897 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.75■□□□□ 0.59
SHMT2P34897 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
SHMT2P34897 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.75■□□□□ 0.59
SHMT2P34897 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHMT2P34897 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SHMT2P34897 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHMT2P34897 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHMT2P34897 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.74■□□□□ 0.59
SHMT2P34897 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.74■□□□□ 0.59
SHMT2P34897 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.74■□□□□ 0.59
SHMT2P34897 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SHMT2P34897 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHMT2P34897 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
SHMT2P34897 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.74■□□□□ 0.59
SHMT2P34897 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.74■□□□□ 0.59
SHMT2P34897 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.74■□□□□ 0.59
SHMT2P34897 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.74■□□□□ 0.59
SHMT2P34897 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.74■□□□□ 0.59
SHMT2P34897 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SHMT2P34897 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
SHMT2P34897 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SHMT2P34897 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.74■□□□□ 0.59
SHMT2P34897 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHMT2P34897 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SHMT2P34897 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.73■□□□□ 0.59
SHMT2P34897 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SHMT2P34897 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 FSCN1P1-201ENST00000568912 1481 ntBASIC18.73■□□□□ 0.59
SHMT2P34897 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.73■□□□□ 0.59
SHMT2P34897 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
SHMT2P34897 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.73■□□□□ 0.59
SHMT2P34897 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.73■□□□□ 0.59
SHMT2P34897 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SHMT2P34897 AC116562.2-201ENST00000507042 360 ntBASIC18.73■□□□□ 0.59
SHMT2P34897 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.73■□□□□ 0.59
SHMT2P34897 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SHMT2P34897 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 NEFHP1-201ENST00000412845 2629 ntBASIC18.73■□□□□ 0.59
SHMT2P34897 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.73■□□□□ 0.59
SHMT2P34897 TREX1-205ENST00000625293 1783 ntBASIC18.73■□□□□ 0.59
SHMT2P34897 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHMT2P34897 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms