Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CIITAP33076 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.61■■□□□ 1.05
CIITAP33076 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CIITAP33076 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CIITAP33076 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.61■■□□□ 1.05
CIITAP33076 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CIITAP33076 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CIITAP33076 LINC01568-207ENST00000641790 1380 ntBASIC21.61■■□□□ 1.05
CIITAP33076 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CIITAP33076 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CIITAP33076 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CIITAP33076 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CIITAP33076 AC005332.7-201ENST00000614046 2005 ntBASIC21.6■■□□□ 1.05
CIITAP33076 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.6■■□□□ 1.05
CIITAP33076 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CIITAP33076 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CIITAP33076 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.6■■□□□ 1.05
CIITAP33076 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
CIITAP33076 ECEL1P3-201ENST00000427961 737 ntBASIC21.6■■□□□ 1.05
CIITAP33076 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.6■■□□□ 1.05
CIITAP33076 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.6■■□□□ 1.05
CIITAP33076 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.6■■□□□ 1.05
CIITAP33076 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CIITAP33076 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.6■■□□□ 1.05
CIITAP33076 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.6■■□□□ 1.05
CIITAP33076 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CIITAP33076 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CIITAP33076 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CIITAP33076 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.59■■□□□ 1.05
CIITAP33076 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CIITAP33076 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CIITAP33076 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.59■■□□□ 1.05
CIITAP33076 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CIITAP33076 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
CIITAP33076 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.59■■□□□ 1.05
CIITAP33076 AC092338.2-201ENST00000568827 1415 ntBASIC21.59■■□□□ 1.05
CIITAP33076 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CIITAP33076 SLC25A24-204ENST00000569674 2357 ntBASIC21.59■■□□□ 1.05
CIITAP33076 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.58■■□□□ 1.05
CIITAP33076 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CIITAP33076 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CIITAP33076 FEM1AP3-201ENST00000403722 1741 ntBASIC21.58■■□□□ 1.05
CIITAP33076 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.58■■□□□ 1.05
CIITAP33076 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CIITAP33076 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
CIITAP33076 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.58■■□□□ 1.05
CIITAP33076 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.58■■□□□ 1.05
CIITAP33076 INGX-201ENST00000359239 846 ntBASIC21.58■■□□□ 1.05
CIITAP33076 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.58■■□□□ 1.05
CIITAP33076 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CIITAP33076 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.58■■□□□ 1.05
CIITAP33076 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CIITAP33076 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.58■■□□□ 1.04
CIITAP33076 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CIITAP33076 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CIITAP33076 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CIITAP33076 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.58■■□□□ 1.04
CIITAP33076 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.57■■□□□ 1.04
CIITAP33076 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CIITAP33076 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.57■■□□□ 1.04
CIITAP33076 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.57■■□□□ 1.04
CIITAP33076 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CIITAP33076 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.57■■□□□ 1.04
CIITAP33076 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.57■■□□□ 1.04
CIITAP33076 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.57■■□□□ 1.04
CIITAP33076 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.57■■□□□ 1.04
CIITAP33076 AL353719.1-201ENST00000566847 864 ntBASIC21.57■■□□□ 1.04
CIITAP33076 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CIITAP33076 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CIITAP33076 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.57■■□□□ 1.04
CIITAP33076 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.57■■□□□ 1.04
CIITAP33076 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 IRX1P1-201ENST00000438849 1838 ntBASIC21.57■■□□□ 1.04
CIITAP33076 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CIITAP33076 KRT18P22-201ENST00000402024 1347 ntBASIC21.56■■□□□ 1.04
CIITAP33076 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CIITAP33076 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CIITAP33076 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CIITAP33076 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.56■■□□□ 1.04
CIITAP33076 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
CIITAP33076 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CIITAP33076 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CIITAP33076 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms