Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.82□□□□□ -0.04
HOXD3P31249 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
HOXD3P31249 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXD3P31249 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 AC104076.2-201ENST00000448912 469 ntBASIC14.82□□□□□ -0.04
HOXD3P31249 ECEL1P2-202ENST00000465689 757 ntBASIC14.82□□□□□ -0.04
HOXD3P31249 B3GAT3P1-201ENST00000471720 806 ntBASIC14.82□□□□□ -0.04
HOXD3P31249 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 ZNF815P-204ENST00000434898 1737 ntBASIC14.82□□□□□ -0.04
HOXD3P31249 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 TREX1-205ENST00000625293 1783 ntBASIC14.82□□□□□ -0.04
HOXD3P31249 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 AC073508.3-201ENST00000619697 1419 ntBASIC14.82□□□□□ -0.04
HOXD3P31249 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 AFG3L1P-217ENST00000557444 2447 ntBASIC14.82□□□□□ -0.04
HOXD3P31249 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD3P31249 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HOXD3P31249 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXD3P31249 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 RCC2P6-201ENST00000526625 1557 ntBASIC14.81□□□□□ -0.04
HOXD3P31249 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD3P31249 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD3P31249 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD3P31249 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC14.81□□□□□ -0.04
HOXD3P31249 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 MESTP1-201ENST00000404287 994 ntBASIC14.81□□□□□ -0.04
HOXD3P31249 AC004951.3-201ENST00000418645 1148 ntBASIC14.81□□□□□ -0.04
HOXD3P31249 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXD3P31249 Z85996.1-201ENST00000494644 937 ntBASIC14.81□□□□□ -0.04
HOXD3P31249 AC097488.1-201ENST00000507834 756 ntBASIC14.81□□□□□ -0.04
HOXD3P31249 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
HOXD3P31249 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD3P31249 AC011298.2-201ENST00000617989 482 ntBASIC14.81□□□□□ -0.04
HOXD3P31249 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD3P31249 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD3P31249 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
HOXD3P31249 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD3P31249 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD3P31249 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD3P31249 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HOXD3P31249 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HOXD3P31249 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HOXD3P31249 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HOXD3P31249 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
HOXD3P31249 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HOXD3P31249 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HOXD3P31249 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
HOXD3P31249 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HOXD3P31249 AC011506.1-201ENST00000474329 610 ntBASIC14.8□□□□□ -0.04
HOXD3P31249 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXD3P31249 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXD3P31249 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms