Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.55■□□□□ 0.4
SHC1P29353 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SHC1P29353 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHC1P29353 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHC1P29353 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
SHC1P29353 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.55■□□□□ 0.4
SHC1P29353 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHC1P29353 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SHC1P29353 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SHC1P29353 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SHC1P29353 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHC1P29353 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHC1P29353 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHC1P29353 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.54■□□□□ 0.4
SHC1P29353 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
SHC1P29353 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.54■□□□□ 0.4
SHC1P29353 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SHC1P29353 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SHC1P29353 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.54■□□□□ 0.4
SHC1P29353 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.54■□□□□ 0.4
SHC1P29353 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.54■□□□□ 0.4
SHC1P29353 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.54■□□□□ 0.4
SHC1P29353 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.54■□□□□ 0.4
SHC1P29353 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.54■□□□□ 0.4
SHC1P29353 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.54■□□□□ 0.4
SHC1P29353 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.54■□□□□ 0.4
SHC1P29353 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
SHC1P29353 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SHC1P29353 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.54■□□□□ 0.4
SHC1P29353 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
SHC1P29353 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.54■□□□□ 0.4
SHC1P29353 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHC1P29353 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.53■□□□□ 0.4
SHC1P29353 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SHC1P29353 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SHC1P29353 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.53■□□□□ 0.4
SHC1P29353 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SHC1P29353 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.53■□□□□ 0.4
SHC1P29353 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.53■□□□□ 0.4
SHC1P29353 AC008550.1-201ENST00000511500 884 ntBASIC17.53■□□□□ 0.4
SHC1P29353 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.53■□□□□ 0.4
SHC1P29353 RARRES2P10-201ENST00000564312 460 ntBASIC17.53■□□□□ 0.4
SHC1P29353 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.53■□□□□ 0.4
SHC1P29353 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.53■□□□□ 0.4
SHC1P29353 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SHC1P29353 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.53■□□□□ 0.4
SHC1P29353 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.53■□□□□ 0.4
SHC1P29353 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHC1P29353 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.53■□□□□ 0.4
SHC1P29353 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.52■□□□□ 0.4
SHC1P29353 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.52■□□□□ 0.4
SHC1P29353 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.52■□□□□ 0.4
SHC1P29353 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.52■□□□□ 0.4
SHC1P29353 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
SHC1P29353 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHC1P29353 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.52■□□□□ 0.4
SHC1P29353 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms