Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH3P22223 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDH3P22223 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH3P22223 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDH3P22223 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH3P22223 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.74■□□□□ 0.59
CDH3P22223 AC131212.4-201ENST00000623606 975 ntBASIC18.74■□□□□ 0.59
CDH3P22223 AC138932.1-201ENST00000534164 6830 ntBASIC18.74■□□□□ 0.59
CDH3P22223 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDH3P22223 TCF3P1-201ENST00000423021 1937 ntBASIC18.74■□□□□ 0.59
CDH3P22223 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.74■□□□□ 0.59
CDH3P22223 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDH3P22223 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
CDH3P22223 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.74■□□□□ 0.59
CDH3P22223 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDH3P22223 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CDH3P22223 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CDH3P22223 AC112907.3-201ENST00000577781 2400 ntBASIC18.73■□□□□ 0.59
CDH3P22223 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH3P22223 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CDH3P22223 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CDH3P22223 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH3P22223 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CDH3P22223 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.73■□□□□ 0.59
CDH3P22223 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CDH3P22223 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CDH3P22223 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CDH3P22223 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CDH3P22223 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH3P22223 REXO1L10P-201ENST00000615707 1290 ntBASIC18.73■□□□□ 0.59
CDH3P22223 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.73■□□□□ 0.59
CDH3P22223 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.73■□□□□ 0.59
CDH3P22223 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.73■□□□□ 0.59
CDH3P22223 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CDH3P22223 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDH3P22223 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
CDH3P22223 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.72■□□□□ 0.59
CDH3P22223 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.72■□□□□ 0.59
CDH3P22223 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.72■□□□□ 0.59
CDH3P22223 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.72■□□□□ 0.59
CDH3P22223 HLA-A-209ENST00000638375 975 ntBASIC18.72■□□□□ 0.59
CDH3P22223 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CDH3P22223 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CDH3P22223 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
CDH3P22223 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CDH3P22223 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDH3P22223 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.72■□□□□ 0.59
CDH3P22223 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CDH3P22223 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CDH3P22223 UNC93B2-201ENST00000285383 730 ntBASIC18.71■□□□□ 0.59
CDH3P22223 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.71■□□□□ 0.59
CDH3P22223 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.71■□□□□ 0.59
CDH3P22223 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.71■□□□□ 0.59
CDH3P22223 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CDH3P22223 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.71■□□□□ 0.59
CDH3P22223 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.71■□□□□ 0.59
CDH3P22223 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.71■□□□□ 0.59
CDH3P22223 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH3P22223 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CDH3P22223 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CDH3P22223 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.7■□□□□ 0.58
CDH3P22223 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.7■□□□□ 0.58
CDH3P22223 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CDH3P22223 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CDH3P22223 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH3P22223 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms