Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.28■■□□□ 1.16
CDKL5O76039 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.28■■□□□ 1.16
CDKL5O76039 UBQLN4P1-201ENST00000461599 1801 ntBASIC22.28■■□□□ 1.16
CDKL5O76039 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC22.28■■□□□ 1.16
CDKL5O76039 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CDKL5O76039 FEM1AP3-201ENST00000403722 1741 ntBASIC22.28■■□□□ 1.16
CDKL5O76039 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDKL5O76039 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDKL5O76039 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDKL5O76039 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDKL5O76039 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC22.27■■□□□ 1.16
CDKL5O76039 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 AC004980.1-204ENST00000429707 299 ntBASIC22.27■■□□□ 1.16
CDKL5O76039 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CDKL5O76039 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.27■■□□□ 1.16
CDKL5O76039 AF186192.3-201ENST00000583427 947 ntBASIC22.27■■□□□ 1.16
CDKL5O76039 AL135905.2-201ENST00000584934 1404 ntBASIC22.27■■□□□ 1.16
CDKL5O76039 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.27■■□□□ 1.16
CDKL5O76039 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC22.27■■□□□ 1.16
CDKL5O76039 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
CDKL5O76039 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDKL5O76039 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
CDKL5O76039 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CDKL5O76039 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC22.26■■□□□ 1.15
CDKL5O76039 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
CDKL5O76039 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC22.26■■□□□ 1.15
CDKL5O76039 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC22.26■■□□□ 1.15
CDKL5O76039 KRT16P1-201ENST00000399124 1418 ntBASIC22.26■■□□□ 1.15
CDKL5O76039 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC22.26■■□□□ 1.15
CDKL5O76039 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CDKL5O76039 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.26■■□□□ 1.15
CDKL5O76039 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CDKL5O76039 PPP1R14BP5-201ENST00000440334 435 ntBASIC22.26■■□□□ 1.15
CDKL5O76039 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC22.26■■□□□ 1.15
CDKL5O76039 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC22.26■■□□□ 1.15
CDKL5O76039 AC142381.4-202ENST00000563973 229 ntBASIC22.26■■□□□ 1.15
CDKL5O76039 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC22.26■■□□□ 1.15
CDKL5O76039 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC22.26■■□□□ 1.15
CDKL5O76039 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 TNXA-203ENST00000507684 2038 ntBASIC22.26■■□□□ 1.15
CDKL5O76039 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDKL5O76039 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC22.25■■□□□ 1.15
CDKL5O76039 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 TSPY23P-201ENST00000440136 739 ntBASIC22.25■■□□□ 1.15
CDKL5O76039 RPS2P4-201ENST00000476944 856 ntBASIC22.25■■□□□ 1.15
CDKL5O76039 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.25■■□□□ 1.15
CDKL5O76039 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.25■■□□□ 1.15
CDKL5O76039 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CDKL5O76039 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.25■■□□□ 1.15
CDKL5O76039 AC026271.3-201ENST00000571884 352 ntBASIC22.25■■□□□ 1.15
CDKL5O76039 AC073195.1-201ENST00000607241 877 ntBASIC22.25■■□□□ 1.15
CDKL5O76039 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.25■■□□□ 1.15
CDKL5O76039 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 AL049812.1-201ENST00000432563 2267 ntBASIC22.25■■□□□ 1.15
CDKL5O76039 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC22.25■■□□□ 1.15
CDKL5O76039 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC22.25■■□□□ 1.15
CDKL5O76039 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDKL5O76039 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CDKL5O76039 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.24■■□□□ 1.15
CDKL5O76039 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDKL5O76039 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.24■■□□□ 1.15
CDKL5O76039 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.24■■□□□ 1.15
CDKL5O76039 AC098590.1-201ENST00000468126 897 ntBASIC22.24■■□□□ 1.15
CDKL5O76039 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC22.24■■□□□ 1.15
CDKL5O76039 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms