Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC141586.3-201ENST00000562166 1838 ntBASIC21.54■■□□□ 1.04
MSH4O15457 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
MSH4O15457 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH4O15457 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
MSH4O15457 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH4O15457 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH4O15457 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH4O15457 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.53■■□□□ 1.04
MSH4O15457 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.53■■□□□ 1.04
MSH4O15457 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.53■■□□□ 1.04
MSH4O15457 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 EGLN1P1-201ENST00000531623 762 ntBASIC21.53■■□□□ 1.04
MSH4O15457 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 AL023803.3-201ENST00000615559 522 ntBASIC21.53■■□□□ 1.04
MSH4O15457 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH4O15457 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
MSH4O15457 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
MSH4O15457 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
MSH4O15457 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
MSH4O15457 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH4O15457 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH4O15457 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH4O15457 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH4O15457 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
MSH4O15457 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH4O15457 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
MSH4O15457 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
MSH4O15457 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.52■■□□□ 1.04
MSH4O15457 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.52■■□□□ 1.04
MSH4O15457 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.52■■□□□ 1.04
MSH4O15457 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.52■■□□□ 1.04
MSH4O15457 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH4O15457 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH4O15457 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MSH4O15457 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
MSH4O15457 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
MSH4O15457 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
MSH4O15457 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH4O15457 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH4O15457 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH4O15457 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH4O15457 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH4O15457 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
MSH4O15457 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
MSH4O15457 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
MSH4O15457 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
MSH4O15457 SLC25A1P2-201ENST00000430693 912 ntBASIC21.51■■□□□ 1.03
MSH4O15457 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH4O15457 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.51■■□□□ 1.03
MSH4O15457 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH4O15457 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH4O15457 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.51■■□□□ 1.03
MSH4O15457 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH4O15457 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH4O15457 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH4O15457 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH4O15457 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH4O15457 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH4O15457 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH4O15457 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 CA15P1-201ENST00000481698 905 ntBASIC21.5■■□□□ 1.03
MSH4O15457 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH4O15457 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH4O15457 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.5■■□□□ 1.03
MSH4O15457 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH4O15457 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH4O15457 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH4O15457 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
MSH4O15457 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH4O15457 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.5■■□□□ 1.03
MSH4O15457 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH4O15457 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 IRX1P1-201ENST00000438849 1838 ntBASIC21.5■■□□□ 1.03
MSH4O15457 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH4O15457 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH4O15457 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH4O15457 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
MSH4O15457 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH4O15457 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH4O15457 AC092338.2-201ENST00000568827 1415 ntBASIC21.49■■□□□ 1.03
MSH4O15457 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms