Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC15.41■□□□□ 0.06
HMGB3O15347 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.41■□□□□ 0.06
HMGB3O15347 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.41■□□□□ 0.06
HMGB3O15347 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HMGB3O15347 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
HMGB3O15347 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB3O15347 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB3O15347 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC15.4■□□□□ 0.06
HMGB3O15347 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB3O15347 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HMGB3O15347 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC15.4■□□□□ 0.06
HMGB3O15347 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
HMGB3O15347 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
HMGB3O15347 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HMGB3O15347 AC091799.1-201ENST00000422823 811 ntBASIC15.4■□□□□ 0.06
HMGB3O15347 AC027682.1-201ENST00000562846 899 ntBASIC15.4■□□□□ 0.06
HMGB3O15347 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 MAG-206ENST00000597035 542 ntTSL 4 BASIC15.4■□□□□ 0.06
HMGB3O15347 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB3O15347 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.4■□□□□ 0.06
HMGB3O15347 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB3O15347 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.06
HMGB3O15347 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB3O15347 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HMGB3O15347 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 AC006333.2-201ENST00000607957 2099 ntBASIC15.39■□□□□ 0.05
HMGB3O15347 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
HMGB3O15347 AC135050.7-201ENST00000624508 2218 ntBASIC15.39■□□□□ 0.05
HMGB3O15347 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
HMGB3O15347 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC15.39■□□□□ 0.05
HMGB3O15347 AC010141.2-201ENST00000452426 721 ntBASIC15.39■□□□□ 0.05
HMGB3O15347 AC012414.1-201ENST00000556676 535 ntBASIC15.39■□□□□ 0.05
HMGB3O15347 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC15.39■□□□□ 0.05
HMGB3O15347 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB3O15347 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC15.39■□□□□ 0.05
HMGB3O15347 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.39■□□□□ 0.05
HMGB3O15347 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC15.39■□□□□ 0.05
HMGB3O15347 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB3O15347 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB3O15347 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
HMGB3O15347 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB3O15347 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB3O15347 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB3O15347 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HMGB3O15347 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms