Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.6■□□□□ 0.57
UBFD1O14562 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
UBFD1O14562 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
UBFD1O14562 UNC93B4-201ENST00000505679 747 ntBASIC18.6■□□□□ 0.57
UBFD1O14562 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
UBFD1O14562 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.6■□□□□ 0.57
UBFD1O14562 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
UBFD1O14562 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.6■□□□□ 0.57
UBFD1O14562 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
UBFD1O14562 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.6■□□□□ 0.57
UBFD1O14562 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.6■□□□□ 0.57
UBFD1O14562 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
UBFD1O14562 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
UBFD1O14562 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBFD1O14562 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBFD1O14562 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.6■□□□□ 0.57
UBFD1O14562 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBFD1O14562 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
UBFD1O14562 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.6■□□□□ 0.57
UBFD1O14562 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.6■□□□□ 0.57
UBFD1O14562 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBFD1O14562 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.59■□□□□ 0.57
UBFD1O14562 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 AC090164.3-201ENST00000610780 2143 ntBASIC18.59■□□□□ 0.57
UBFD1O14562 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.59■□□□□ 0.57
UBFD1O14562 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.59■□□□□ 0.57
UBFD1O14562 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.59■□□□□ 0.57
UBFD1O14562 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.59■□□□□ 0.57
UBFD1O14562 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 AC142086.2-201ENST00000569753 217 ntBASIC18.59■□□□□ 0.57
UBFD1O14562 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
UBFD1O14562 AC133041.1-202ENST00000642053 222 ntBASIC18.59■□□□□ 0.57
UBFD1O14562 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
UBFD1O14562 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.59■□□□□ 0.57
UBFD1O14562 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
UBFD1O14562 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
UBFD1O14562 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
UBFD1O14562 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
UBFD1O14562 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
UBFD1O14562 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.58■□□□□ 0.57
UBFD1O14562 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
UBFD1O14562 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.58■□□□□ 0.57
UBFD1O14562 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
UBFD1O14562 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
UBFD1O14562 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
UBFD1O14562 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
UBFD1O14562 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.58■□□□□ 0.56
UBFD1O14562 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.58■□□□□ 0.56
UBFD1O14562 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
UBFD1O14562 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
UBFD1O14562 AC104771.1-201ENST00000603335 964 ntBASIC18.58■□□□□ 0.56
UBFD1O14562 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
UBFD1O14562 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
UBFD1O14562 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
UBFD1O14562 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
UBFD1O14562 AC135050.7-201ENST00000624508 2218 ntBASIC18.58■□□□□ 0.56
UBFD1O14562 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.58■□□□□ 0.56
UBFD1O14562 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
UBFD1O14562 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.58■□□□□ 0.56
UBFD1O14562 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
UBFD1O14562 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.57■□□□□ 0.56
UBFD1O14562 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
UBFD1O14562 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
UBFD1O14562 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
UBFD1O14562 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
UBFD1O14562 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
UBFD1O14562 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
UBFD1O14562 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
UBFD1O14562 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
UBFD1O14562 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.57■□□□□ 0.56
UBFD1O14562 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
UBFD1O14562 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
UBFD1O14562 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
UBFD1O14562 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.57■□□□□ 0.56
UBFD1O14562 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.57■□□□□ 0.56
UBFD1O14562 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.57■□□□□ 0.56
UBFD1O14562 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.57■□□□□ 0.56
UBFD1O14562 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.57■□□□□ 0.56
UBFD1O14562 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.57■□□□□ 0.56
UBFD1O14562 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
UBFD1O14562 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.57■□□□□ 0.56
UBFD1O14562 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.57■□□□□ 0.56
UBFD1O14562 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.57■□□□□ 0.56
UBFD1O14562 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms