Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
MSH5O43196 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
MSH5O43196 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
MSH5O43196 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC9.43□□□□□ -0.9
MSH5O43196 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 AC104083.1-201ENST00000569449 2615 ntBASIC9.43□□□□□ -0.9
MSH5O43196 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 Y_RNA.456-201ENST00000384232 111 ntBASIC9.43□□□□□ -0.9
MSH5O43196 RNA5SP56-201ENST00000410277 118 ntBASIC9.43□□□□□ -0.9
MSH5O43196 Y_RNA.611-201ENST00000410682 108 ntBASIC9.43□□□□□ -0.9
MSH5O43196 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC9.43□□□□□ -0.9
MSH5O43196 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
MSH5O43196 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC9.43□□□□□ -0.9
MSH5O43196 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC9.43□□□□□ -0.9
MSH5O43196 AC005518.2-201ENST00000603254 282 ntBASIC9.43□□□□□ -0.9
MSH5O43196 AL161798.1-201ENST00000604630 131 ntBASIC9.43□□□□□ -0.9
MSH5O43196 MIR6778-201ENST00000617912 73 ntBASIC9.43□□□□□ -0.9
MSH5O43196 MIR6130-201ENST00000619419 109 ntBASIC9.43□□□□□ -0.9
MSH5O43196 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC9.43□□□□□ -0.9
MSH5O43196 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC9.43□□□□□ -0.9
MSH5O43196 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 SCAND2P-201ENST00000348993 8975 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
MSH5O43196 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
MSH5O43196 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
MSH5O43196 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
MSH5O43196 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC9.42□□□□□ -0.9
MSH5O43196 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC9.42□□□□□ -0.9
MSH5O43196 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
MSH5O43196 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
MSH5O43196 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
MSH5O43196 RNVU1-3-201ENST00000364313 161 ntBASIC9.42□□□□□ -0.9
MSH5O43196 Y_RNA.310-201ENST00000365063 113 ntBASIC9.42□□□□□ -0.9
MSH5O43196 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC9.42□□□□□ -0.9
MSH5O43196 AL354714.5-201ENST00000450131 590 ntBASIC9.42□□□□□ -0.9
MSH5O43196 AC099670.1-201ENST00000455141 783 ntBASIC9.42□□□□□ -0.9
MSH5O43196 snoU13.6-201ENST00000458785 104 ntBASIC9.42□□□□□ -0.9
MSH5O43196 AC078817.1-201ENST00000492623 435 ntBASIC9.42□□□□□ -0.9
MSH5O43196 GLUD1P3-202ENST00000508551 200 ntBASIC9.42□□□□□ -0.9
MSH5O43196 RNA5SP518-201ENST00000515957 119 ntBASIC9.42□□□□□ -0.9
MSH5O43196 AP005597.2-201ENST00000526238 341 ntBASIC9.42□□□□□ -0.9
MSH5O43196 GSTP1P1-201ENST00000548078 319 ntBASIC9.42□□□□□ -0.9
MSH5O43196 MRPS21P9-201ENST00000571150 257 ntBASIC9.42□□□□□ -0.9
MSH5O43196 MIR4271-201ENST00000582451 67 ntBASIC9.42□□□□□ -0.9
MSH5O43196 AC092032.1-201ENST00000603090 165 ntBASIC9.42□□□□□ -0.9
MSH5O43196 AC007390.2-201ENST00000606229 3803 ntBASIC9.42□□□□□ -0.9
MSH5O43196 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC9.42□□□□□ -0.9
MSH5O43196 AL137067.1-201ENST00000615933 120 ntBASIC9.42□□□□□ -0.9
MSH5O43196 HOTTIP_2.1-201ENST00000616633 376 ntBASIC9.42□□□□□ -0.9
MSH5O43196 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
MSH5O43196 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC9.42□□□□□ -0.9
MSH5O43196 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC9.42□□□□□ -0.9
MSH5O43196 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC9.42□□□□□ -0.9
MSH5O43196 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
MSH5O43196 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
MSH5O43196 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
MSH5O43196 AP003175.1-201ENST00000641383 6658 ntBASIC9.41□□□□□ -0.9
MSH5O43196 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC9.41□□□□□ -0.9
MSH5O43196 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
MSH5O43196 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC9.41□□□□□ -0.9
MSH5O43196 AL450326.2-201ENST00000421913 1962 ntBASIC9.41□□□□□ -0.9
MSH5O43196 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC9.41□□□□□ -0.9
MSH5O43196 SLC39A12-204ENST00000539911 2461 ntTSL 2 BASIC9.41□□□□□ -0.9
MSH5O43196 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
MSH5O43196 RNU5F-3P-201ENST00000363767 117 ntBASIC9.41□□□□□ -0.9
MSH5O43196 RNA5SP122-201ENST00000384457 108 ntBASIC9.41□□□□□ -0.9
MSH5O43196 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
MSH5O43196 MIR891A-201ENST00000401237 79 ntBASIC9.41□□□□□ -0.9
MSH5O43196 MIR1278-201ENST00000408753 81 ntBASIC9.41□□□□□ -0.9
MSH5O43196 AC018638.3-201ENST00000461273 132 ntBASIC9.41□□□□□ -0.9
MSH5O43196 AC068522.1-201ENST00000482895 345 ntBASIC9.41□□□□□ -0.9
MSH5O43196 RPS27P20-201ENST00000492051 246 ntBASIC9.41□□□□□ -0.9
MSH5O43196 RPL23AP54-201ENST00000495129 419 ntBASIC9.41□□□□□ -0.9
MSH5O43196 AC023818.1-201ENST00000498379 384 ntBASIC9.41□□□□□ -0.9
MSH5O43196 AC233724.1-201ENST00000503894 233 ntBASIC9.41□□□□□ -0.9
MSH5O43196 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC9.41□□□□□ -0.9
MSH5O43196 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC9.41□□□□□ -0.9
MSH5O43196 MYL6-211ENST00000548580 528 ntTSL 2 BASIC9.41□□□□□ -0.9
MSH5O43196 RN7SKP23-201ENST00000625159 4301 ntBASIC9.41□□□□□ -0.9
MSH5O43196 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
MSH5O43196 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC9.41□□□□□ -0.9
MSH5O43196 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC9.41□□□□□ -0.9
MSH5O43196 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC9.4□□□□□ -0.9
MSH5O43196 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC9.4□□□□□ -0.9
MSH5O43196 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
MSH5O43196 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
MSH5O43196 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 364.7 ms