Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RPL32P35-201ENST00000415214 394 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.31□□□□□ -1.88
PTPN4P29074 OR2AS1P-201ENST00000427827 319 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AC005326.1-201ENST00000429197 123 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.31□□□□□ -1.88
PTPN4P29074 MTND4P6-201ENST00000438297 472 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 AL606517.1-201ENST00000446914 387 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AC007327.1-201ENST00000447461 264 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 AC114981.1-201ENST00000503897 678 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 POU5F1P7-201ENST00000508759 541 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 ERHP1-201ENST00000523006 310 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 SNRPGP16-201ENST00000533275 226 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.31□□□□□ -1.88
PTPN4P29074 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.31□□□□□ -1.88
PTPN4P29074 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 HIGD1AP17-201ENST00000554576 276 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.31□□□□□ -1.88
PTPN4P29074 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.31□□□□□ -1.88
PTPN4P29074 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.31□□□□□ -1.88
PTPN4P29074 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.31□□□□□ -1.88
PTPN4P29074 AP001330.4-201ENST00000604350 154 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AC124312.4-201ENST00000605533 310 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AL050303.3-201ENST00000613704 284 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AL158163.2-201ENST00000619110 700 ntBASIC3.31□□□□□ -1.88
PTPN4P29074 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.31□□□□□ -1.88
PTPN4P29074 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
PTPN4P29074 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
PTPN4P29074 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.31□□□□□ -1.88
PTPN4P29074 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.3□□□□□ -1.88
PTPN4P29074 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
PTPN4P29074 FRG1CP-201ENST00000358464 769 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 RNU5D-1-201ENST00000363299 116 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 RNU6-173P-201ENST00000364215 104 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PTPN4P29074 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PTPN4P29074 RNU6-413P-201ENST00000384115 107 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 SNORD17-201ENST00000390930 237 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 U3.29-201ENST00000391296 212 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AC016769.3-201ENST00000396562 315 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AL354719.1-201ENST00000406535 843 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 HSFY4P-201ENST00000415994 1181 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 SDCBPP3-201ENST00000419629 891 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AC092427.1-201ENST00000439177 601 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 RABEPKP1-201ENST00000440529 1026 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 CYCSP32-201ENST00000440548 321 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AL591503.2-201ENST00000442314 1005 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 USP9YP34-201ENST00000453983 808 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 SUMO2P2-201ENST00000456482 255 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 RPL21P8-201ENST00000465083 535 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 ST13P14-201ENST00000474095 734 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.3□□□□□ -1.88
PTPN4P29074 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.3□□□□□ -1.88
PTPN4P29074 AC096751.1-202ENST00000502691 1067 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 SNORD59.2-201ENST00000516873 68 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 RN7SKP57-201ENST00000517248 293 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 HSPA8P13-201ENST00000523715 472 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PTPN4P29074 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.3□□□□□ -1.88
PTPN4P29074 HSPE1P3-201ENST00000559254 309 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.3□□□□□ -1.88
PTPN4P29074 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.3□□□□□ -1.88
PTPN4P29074 MTND3P13-201ENST00000574391 343 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.3□□□□□ -1.88
PTPN4P29074 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.3□□□□□ -1.88
PTPN4P29074 VN1R83P-201ENST00000595685 445 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AC073348.1-201ENST00000623002 331 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 LINC02211-204ENST00000642024 1070 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.3□□□□□ -1.88
PTPN4P29074 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PTPN4P29074 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
PTPN4P29074 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PTPN4P29074 MTND5P19-201ENST00000424872 1794 ntBASIC3.3□□□□□ -1.88
PTPN4P29074 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.3□□□□□ -1.88
PTPN4P29074 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.3□□□□□ -1.88
PTPN4P29074 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PTPN4P29074 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.29□□□□□ -1.88
PTPN4P29074 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PTPN4P29074 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PTPN4P29074 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PTPN4P29074 SNORA38.1-201ENST00000364172 131 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 RNU6-1122P-201ENST00000384449 107 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 RNU2-15P-201ENST00000410692 191 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 RNU2-42P-201ENST00000410697 113 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 RNU4-22P-201ENST00000411058 166 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 Z92545.1-201ENST00000411782 234 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 Z99755.1-201ENST00000414048 380 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.29□□□□□ -1.88
PTPN4P29074 NANOGP5-201ENST00000424456 877 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 RPL7P44-201ENST00000424827 742 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 AC005300.1-201ENST00000428401 373 ntBASIC3.29□□□□□ -1.88
PTPN4P29074 AC244505.4-201ENST00000434905 287 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms