RNA–Protein interactions for RNA: ENST00000419629.1

SDCBPP3-201, Transcript of syndecan binding protein pseudogene 3, humanhuman

BASIC

Gene SDCBPP3, Length 891 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPP3-201ENST00000419629 AEBP2Q6ZN18 517 aaPredicted RBP23.72■■□□□ 1.39
SDCBPP3-201ENST00000419629 CHIC1Q5VXU3 224 aa22.48■■□□□ 1.19
SDCBPP3-201ENST00000419629 SENP3Q9H4L4 574 aaPredicted RBP20.19■□□□□ 0.82
SDCBPP3-201ENST00000419629 PHF23Q9BUL5 403 aaPredicted RBP19.95■□□□□ 0.78
SDCBPP3-201ENST00000419629 FOXD1Q16676 465 aa18.84■□□□□ 0.61
SDCBPP3-201ENST00000419629 PLPPR3Q6T4P5 718 aa17.94■□□□□ 0.46
SDCBPP3-201ENST00000419629 PPP6R1Q9UPN7 881 aa17.64■□□□□ 0.41
SDCBPP3-201ENST00000419629 MSH5O43196 834 aa17.6■□□□□ 0.41
SDCBPP3-201ENST00000419629 PIAS4Q8N2W9 510 aaPredicted RBP17.57■□□□□ 0.4
SDCBPP3-201ENST00000419629 ADRA2BP18089 450 aa17.56■□□□□ 0.4
SDCBPP3-201ENST00000419629 POTEDQ86YR6 584 aa17.23■□□□□ 0.35
SDCBPP3-201ENST00000419629 MAPK8IP2Q13387 824 aaPredicted RBP16.15■□□□□ 0.18
SDCBPP3-201ENST00000419629 SCAF1Q9H7N4 1312 aaKnown RBP16.03■□□□□ 0.16
SDCBPP3-201ENST00000419629 DMRT2Q9Y5R5 561 aa16.02■□□□□ 0.16
SDCBPP3-201ENST00000419629 PPP4R3CPQ6ZMV5 832 aa15.73■□□□□ 0.11
SDCBPP3-201ENST00000419629 HOXD11P31277 338 aaPredicted RBP15.44■□□□□ 0.06
SDCBPP3-201ENST00000419629 CNKSR2Q8WXI2 1034 aa15.43■□□□□ 0.06
SDCBPP3-201ENST00000419629 DCAF8L1A6NGE4 600 aa15.32■□□□□ 0.04
SDCBPP3-201ENST00000419629 RNF216Q9NWF9 866 aaPredicted RBP15.31■□□□□ 0.04
SDCBPP3-201ENST00000419629 CACNB1Q02641 598 aaPredicted RBP15.12■□□□□ 0.01
SDCBPP3-201ENST00000419629 NCBP3Q53F19 620 aaKnown RBP15.1■□□□□ 0.01
SDCBPP3-201ENST00000419629 RNF39Q9H2S5 420 aa15.06■□□□□ 0
SDCBPP3-201ENST00000419629 NPM3O75607 178 aaKnown RBP14.91□□□□□ -0.02
SDCBPP3-201ENST00000419629 DNAJC5BQ9UF47 199 aa14.91□□□□□ -0.02
SDCBPP3-201ENST00000419629 C1QBPQ07021 282 aaKnown RBP14.81□□□□□ -0.04
SDCBPP3-201ENST00000419629 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.68□□□□□ -0.06
SDCBPP3-201ENST00000419629 KCNA4P22459 653 aa14.62□□□□□ -0.07
SDCBPP3-201ENST00000419629 U3KPZ7 1027 aaPredicted RBP14.39□□□□□ -0.11
SDCBPP3-201ENST00000419629 SLC4A2P04920 1241 aa14.27□□□□□ -0.13
SDCBPP3-201ENST00000419629 SPINK5Q9NQ38 1064 aaPredicted RBP14.19□□□□□ -0.14
SDCBPP3-201ENST00000419629 CAPN15O75808 1086 aa14.13□□□□□ -0.15
SDCBPP3-201ENST00000419629 DSG3P32926 999 aa14.09□□□□□ -0.15
SDCBPP3-201ENST00000419629 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.94□□□□□ -0.18
SDCBPP3-201ENST00000419629 HNRNPUL2Q1KMD3 747 aaKnown RBP13.94□□□□□ -0.18
SDCBPP3-201ENST00000419629 APLP2Q06481 763 aa13.93□□□□□ -0.18
SDCBPP3-201ENST00000419629 TRHP20396 242 aaPredicted RBP13.9□□□□□ -0.18
SDCBPP3-201ENST00000419629 ZNF219Q9P2Y4 722 aaPredicted RBP13.88□□□□□ -0.19
SDCBPP3-201ENST00000419629 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
SDCBPP3-201ENST00000419629 ABCB7O75027 752 aa13.81□□□□□ -0.2
SDCBPP3-201ENST00000419629 SLC4A1APQ9BWU0 796 aaKnown RBP13.78□□□□□ -0.2
SDCBPP3-201ENST00000419629 MYCNP04198 464 aaPredicted RBP13.76□□□□□ -0.21
SDCBPP3-201ENST00000419629 FOXD4L1Q9NU39 408 aa13.62□□□□□ -0.23
SDCBPP3-201ENST00000419629 POLA2Q14181 598 aa13.55□□□□□ -0.24
SDCBPP3-201ENST00000419629 POTEHQ6S545 545 aa13.49□□□□□ -0.25
SDCBPP3-201ENST00000419629 ATF5Q9Y2D1 282 aaPredicted RBP13.49□□□□□ -0.25
SDCBPP3-201ENST00000419629 ZBTB22O15209 634 aa13.46□□□□□ -0.25
SDCBPP3-201ENST00000419629 RBM42Q9BTD8 480 aaKnown RBP13.4□□□□□ -0.26
SDCBPP3-201ENST00000419629 ZBTB12Q9Y330 459 aaPredicted RBP13.24□□□□□ -0.29
SDCBPP3-201ENST00000419629 ATXN8OSP0DMR3 200 aa13.23□□□□□ -0.29
SDCBPP3-201ENST00000419629 CHRDL2Q6WN34 429 aa13.14□□□□□ -0.31
SDCBPP3-201ENST00000419629 AKT1S1Q96B36 256 aa13.12□□□□□ -0.31
SDCBPP3-201ENST00000419629 OSCARQ8IYS5 282 aa13.11□□□□□ -0.31
SDCBPP3-201ENST00000419629 REM2Q8IYK8 340 aaPredicted RBP13.01□□□□□ -0.33
SDCBPP3-201ENST00000419629 FBLN2P98095 1184 aa12.91□□□□□ -0.34
SDCBPP3-201ENST00000419629 MKRN4PQ13434 485 aaPredicted RBP12.87□□□□□ -0.35
SDCBPP3-201ENST00000419629 PITPNM1O00562 1244 aa12.86□□□□□ -0.35
SDCBPP3-201ENST00000419629 SPDYE2BA6NHP3 402 aa12.85□□□□□ -0.35
SDCBPP3-201ENST00000419629 SPDYE6P0CI01 402 aa12.85□□□□□ -0.35
SDCBPP3-201ENST00000419629 SPDYE2Q495Y8 402 aa12.85□□□□□ -0.35
SDCBPP3-201ENST00000419629 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
SDCBPP3-201ENST00000419629 CSRNP3Q8WYN3 585 aa12.82□□□□□ -0.36
SDCBPP3-201ENST00000419629 FXR2P51116 673 aaKnown RBP eCLIP12.77□□□□□ -0.37
SDCBPP3-201ENST00000419629 ZNF692Q9BU19 519 aaPredicted RBP12.7□□□□□ -0.38
SDCBPP3-201ENST00000419629 SSUH2Q9Y2M2 353 aa12.7□□□□□ -0.38
SDCBPP3-201ENST00000419629 SP7Q8TDD2 431 aaPredicted RBP12.64□□□□□ -0.39
SDCBPP3-201ENST00000419629 SPDYE1Q8NFV5 336 aaPredicted RBP12.62□□□□□ -0.39
SDCBPP3-201ENST00000419629 EHMT2Q96KQ7 1210 aa12.6□□□□□ -0.39
SDCBPP3-201ENST00000419629 HAX1O00165 279 aa12.59□□□□□ -0.39
SDCBPP3-201ENST00000419629 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
SDCBPP3-201ENST00000419629 PRKAR2AP13861 404 aaKnown RBP12.52□□□□□ -0.41
SDCBPP3-201ENST00000419629 PABPN1Q86U42 306 aaKnown RBP eCLIP12.51□□□□□ -0.41
SDCBPP3-201ENST00000419629 EVX2Q03828 476 aa12.48□□□□□ -0.41
SDCBPP3-201ENST00000419629 PRR29P0C7W0 189 aa12.4□□□□□ -0.42
SDCBPP3-201ENST00000419629 CHADLQ6NUI6 762 aa12.38□□□□□ -0.43
SDCBPP3-201ENST00000419629 C19orf67A6NJJ6 358 aa12.36□□□□□ -0.43
SDCBPP3-201ENST00000419629 SPDYE4A6NLX3 237 aa12.22□□□□□ -0.45
SDCBPP3-201ENST00000419629 FARP1Q9Y4F1 1045 aaPredicted RBP12.2□□□□□ -0.46
SDCBPP3-201ENST00000419629 GABBR2O75899 941 aa12.17□□□□□ -0.46
SDCBPP3-201ENST00000419629 STAG3Q9UJ98 1225 aa12.16□□□□□ -0.46
SDCBPP3-201ENST00000419629 CD44P16070 742 aaKnown RBP12.11□□□□□ -0.47
SDCBPP3-201ENST00000419629 CREBZFQ9NS37 354 aa12.11□□□□□ -0.47
SDCBPP3-201ENST00000419629 PROM2Q8N271 834 aa11.97□□□□□ -0.49
SDCBPP3-201ENST00000419629 CLCN6P51797 869 aa11.96□□□□□ -0.49
SDCBPP3-201ENST00000419629 POTEIP0CG38 1075 aa11.94□□□□□ -0.5
SDCBPP3-201ENST00000419629 ZNF579Q8NAF0 562 aaKnown RBP11.94□□□□□ -0.5
SDCBPP3-201ENST00000419629 ZRANB1Q9UGI0 708 aa11.94□□□□□ -0.5
SDCBPP3-201ENST00000419629 MNX1P50219 401 aaPredicted RBP11.92□□□□□ -0.5
SDCBPP3-201ENST00000419629 NPM1P06748 294 aaKnown RBP eCLIP11.86□□□□□ -0.51
SDCBPP3-201ENST00000419629 LHX8Q68G74 356 aa11.86□□□□□ -0.51
SDCBPP3-201ENST00000419629 DCBLD2Q96PD2 775 aa11.81□□□□□ -0.52
SDCBPP3-201ENST00000419629 PAK3O75914 559 aaPredicted RBP11.8□□□□□ -0.52
SDCBPP3-201ENST00000419629 GALR2O43603 387 aaPredicted RBP11.79□□□□□ -0.52
SDCBPP3-201ENST00000419629 PHF12Q96QT6 1004 aa11.79□□□□□ -0.52
SDCBPP3-201ENST00000419629 MIER1Q8N108 512 aa11.66□□□□□ -0.54
SDCBPP3-201ENST00000419629 TSPYL2Q9H2G4 693 aaPredicted RBP11.65□□□□□ -0.54
SDCBPP3-201ENST00000419629 MS4A3Q96HJ5 214 aa11.62□□□□□ -0.55
SDCBPP3-201ENST00000419629 CCDC61Q9Y6R9 512 aa11.62□□□□□ -0.55
SDCBPP3-201ENST00000419629 PLEKHG5O94827 1062 aa11.6□□□□□ -0.55
SDCBPP3-201ENST00000419629 PELP1Q8IZL8 1130 aaKnown RBP11.6□□□□□ -0.55
SDCBPP3-201ENST00000419629 FKBP8Q14318 412 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms