Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RN7SKP226-201ENST00000364912 300 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 AL021407.1-201ENST00000404531 386 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 RNU6ATAC40P-201ENST00000408580 137 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.52□□□□□ -2.17
PRKDCP78527 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC1.52□□□□□ -2.17
PRKDCP78527 AC012360.2-201ENST00000609349 391 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
PRKDCP78527 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC1.52□□□□□ -2.17
PRKDCP78527 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
PRKDCP78527 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
PRKDCP78527 MTND4P35-201ENST00000604257 1375 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
PRKDCP78527 AL139811.1-201ENST00000424779 2299 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.52□□□□□ -2.17
PRKDCP78527 AC241377.1-201ENST00000619797 406 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 AC093591.3-201ENST00000634516 308 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 AC095050.2-201ENST00000510748 1458 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
PRKDCP78527 AL513175.2-201ENST00000422071 443 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.52□□□□□ -2.17
PRKDCP78527 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.52□□□□□ -2.17
PRKDCP78527 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC1.52□□□□□ -2.17
PRKDCP78527 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.52□□□□□ -2.17
PRKDCP78527 AL359740.1-201ENST00000624340 592 ntBASIC1.52□□□□□ -2.17
PRKDCP78527 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC1.52□□□□□ -2.17
PRKDCP78527 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.52□□□□□ -2.17
PRKDCP78527 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
PRKDCP78527 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.52□□□□□ -2.17
PRKDCP78527 MTND5P35-201ENST00000557537 1720 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 RNU6-342P-201ENST00000384521 104 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 FO393414.1-201ENST00000428697 1184 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 RNU1-123P-201ENST00000458950 160 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 AC017007.3-201ENST00000479865 435 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 MIR4452-201ENST00000583004 71 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 AC087468.1-201ENST00000604365 630 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.51□□□□□ -2.17
PRKDCP78527 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
PRKDCP78527 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
PRKDCP78527 AC234781.4-201ENST00000419384 244 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 UBE2V1P5-201ENST00000440070 405 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 AC140059.1-201ENST00000489238 361 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.51□□□□□ -2.17
PRKDCP78527 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
PRKDCP78527 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.51□□□□□ -2.17
PRKDCP78527 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.51□□□□□ -2.17
PRKDCP78527 RPL36AP6-201ENST00000435770 321 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.51□□□□□ -2.17
PRKDCP78527 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.51□□□□□ -2.17
PRKDCP78527 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.51□□□□□ -2.17
PRKDCP78527 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.51□□□□□ -2.17
PRKDCP78527 AL645944.1-201ENST00000603857 493 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 AC010872.1-201ENST00000624225 675 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC1.51□□□□□ -2.17
PRKDCP78527 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.51□□□□□ -2.17
PRKDCP78527 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
PRKDCP78527 AL445213.1-201ENST00000412589 747 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 AC013404.1-201ENST00000413068 249 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 VN1R31P-201ENST00000417498 730 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 RNA5SP102-201ENST00000516865 106 ntBASIC1.51□□□□□ -2.17
PRKDCP78527 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
PRKDCP78527 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.5□□□□□ -2.17
PRKDCP78527 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
PRKDCP78527 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.5□□□□□ -2.17
PRKDCP78527 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
PRKDCP78527 LSM5-205ENST00000409952 687 ntTSL 4 BASIC1.5□□□□□ -2.17
PRKDCP78527 OR4K11P-201ENST00000431829 904 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
PRKDCP78527 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC1.5□□□□□ -2.17
PRKDCP78527 Z99129.2-201ENST00000619967 314 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.5□□□□□ -2.17
PRKDCP78527 MIR6767-201ENST00000637302 66 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 AC093311.1-201ENST00000506586 2021 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC1.5□□□□□ -2.17
PRKDCP78527 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.5□□□□□ -2.17
PRKDCP78527 Y_RNA.205-201ENST00000364128 113 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 RPL21P134-201ENST00000453468 483 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 RPL21P18-201ENST00000469899 480 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 AC091544.1-201ENST00000484702 348 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 AC068305.1-201ENST00000497406 726 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC1.5□□□□□ -2.17
PRKDCP78527 AC011604.1-201ENST00000545978 196 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC1.5□□□□□ -2.17
PRKDCP78527 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
PRKDCP78527 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
PRKDCP78527 SNORD114-22-201ENST00000365423 72 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
PRKDCP78527 AL354719.1-201ENST00000406535 843 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 RNA5SP129-201ENST00000410276 118 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC1.5□□□□□ -2.17
PRKDCP78527 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.5□□□□□ -2.17
PRKDCP78527 RPS4XP11-201ENST00000446897 772 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC1.5□□□□□ -2.17
PRKDCP78527 MIR4285-201ENST00000581001 85 ntBASIC1.5□□□□□ -2.17
PRKDCP78527 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC1.5□□□□□ -2.17
PRKDCP78527 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC1.49□□□□□ -2.17
PRKDCP78527 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC1.49□□□□□ -2.17
PRKDCP78527 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
PRKDCP78527 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
PRKDCP78527 RNA5SP210-201ENST00000391034 120 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms