Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC105137.2-201ENST00000569073 466 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AC006023.2-201ENST00000609916 167 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 Z99496.1-201ENST00000469424 1477 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 CKS1BP5-201ENST00000434172 273 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC011816.1-201ENST00000441346 546 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 EEF1B2P7-201ENST00000451177 676 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 OR4G11P-201ENST00000492842 939 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC008716.1-201ENST00000511084 513 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AF279873.1-201ENST00000523393 313 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC022069.1-201ENST00000582910 658 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AP001350.1-201ENST00000601906 1524 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 BTBD10P2-201ENST00000404779 676 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 RPL7P46-201ENST00000425129 740 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC091544.4-201ENST00000555268 342 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC010735.1-201ENST00000567305 1026 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC055764.2-201ENST00000610089 670 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 VN1R7P-201ENST00000619242 903 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC009950.2-201ENST00000636548 183 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 MAPK10-322ENST00000641485 4530 ntBASIC2.18□□□□□ -2.06
SCN3AQ9NY46 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.18□□□□□ -2.06
SCN3AQ9NY46 AC103988.1-201ENST00000566382 2177 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AL023284.1-201ENST00000403956 276 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AC005189.1-201ENST00000431286 310 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 TRIM60P3Y-201ENST00000432201 673 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AC023347.2-201ENST00000433994 462 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AL121890.1-201ENST00000435457 205 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 MED6P1-201ENST00000439659 713 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 LINC00888-204ENST00000487386 421 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 OR5H5P-201ENST00000503164 928 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AC234781.5-201ENST00000508429 271 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AP001317.1-201ENST00000531194 960 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 DUXAP3-201ENST00000603616 594 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 MIR6873-201ENST00000622788 63 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AL160394.1-201ENST00000624765 724 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AC006020.1-201ENST00000420179 1854 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 OR5H15-201ENST00000383696 930 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 RNU4-53P-201ENST00000410828 140 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 RPL7P5-201ENST00000471472 736 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.17□□□□□ -2.06
SCN3AQ9NY46 RNA5SP24-201ENST00000516478 95 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 RNU6-1308P-201ENST00000516817 103 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AC245128.3-201ENST00000594721 748 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AC090425.2-201ENST00000608818 501 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 AL162233.1-201ENST00000620014 944 ntBASIC2.17□□□□□ -2.06
SCN3AQ9NY46 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 RNU6-564P-201ENST00000410983 104 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 RPL31P2-201ENST00000413849 377 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 AC104332.2-201ENST00000429959 156 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.16□□□□□ -2.06
SCN3AQ9NY46 TRIM60P18-201ENST00000441518 828 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 RPL39P40-201ENST00000445481 146 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 HMGB1P26-201ENST00000452520 628 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 AC104629.2-201ENST00000468627 598 ntBASIC2.16□□□□□ -2.06
SCN3AQ9NY46 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms