Protein–RNA interactions for Protein: Q99536

VAT1, Synaptic vesicle membrane protein VAT-1 homolog, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1Q99536 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
VAT1Q99536 AC025263.3-201ENST00000622965 1396 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 SNORA70.4-201ENST00000365509 134 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 SNORD21-201ENST00000383953 95 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 RNU6-761P-201ENST00000384148 107 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 MIR592-201ENST00000384959 97 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.77□□□□□ -1.97
VAT1Q99536 AC109780.2-201ENST00000413467 845 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.77□□□□□ -1.97
VAT1Q99536 AC006946.1-201ENST00000429106 328 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.77□□□□□ -1.97
VAT1Q99536 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC112220.1-201ENST00000434628 355 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 SETP8-201ENST00000435341 628 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VAT1Q99536 RPS24P13-201ENST00000442520 397 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AL135938.1-201ENST00000443141 297 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 RPL36AP33-201ENST00000450395 310 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 RPL23AP31-201ENST00000456160 467 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 snoU13.4-201ENST00000458916 104 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.77□□□□□ -1.97
VAT1Q99536 HMGB1P25-201ENST00000468402 607 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC108729.2-201ENST00000476543 840 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.77□□□□□ -1.97
VAT1Q99536 SNORA48.9-201ENST00000516419 162 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.77□□□□□ -1.97
VAT1Q99536 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.77□□□□□ -1.97
VAT1Q99536 MTATP6P25-201ENST00000574491 261 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.77□□□□□ -1.97
VAT1Q99536 VN1R88P-201ENST00000596787 292 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.77□□□□□ -1.97
VAT1Q99536 AL450270.1-201ENST00000606160 391 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AL627309.6-201ENST00000606857 840 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC096586.1-201ENST00000610267 561 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 AC090116.1-201ENST00000615679 446 ntBASIC2.77□□□□□ -1.97
VAT1Q99536 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VAT1Q99536 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.77□□□□□ -1.97
VAT1Q99536 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VAT1Q99536 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VAT1Q99536 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.77□□□□□ -1.97
VAT1Q99536 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
VAT1Q99536 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.76□□□□□ -1.97
VAT1Q99536 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
VAT1Q99536 RNU1-100P-201ENST00000365255 165 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 SNORA18.3-201ENST00000384122 132 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 MIR491-201ENST00000384877 84 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VAT1Q99536 RNU4-65P-201ENST00000410473 140 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.76□□□□□ -1.97
VAT1Q99536 FNDC3CP-201ENST00000420795 1155 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.76□□□□□ -1.97
VAT1Q99536 RPP40P1-201ENST00000426762 456 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AC096632.1-201ENST00000427395 310 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.76□□□□□ -1.97
VAT1Q99536 COX6CP2-201ENST00000444980 225 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.76□□□□□ -1.97
VAT1Q99536 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.76□□□□□ -1.97
VAT1Q99536 GMPSP1-201ENST00000514075 579 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 RNA5SP76-201ENST00000516277 87 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 RNA5SP367-201ENST00000516557 118 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.76□□□□□ -1.97
VAT1Q99536 AC019227.1-201ENST00000526902 510 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.76□□□□□ -1.97
VAT1Q99536 AC007536.1-201ENST00000533382 349 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VAT1Q99536 AC007954.1-201ENST00000554198 494 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.76□□□□□ -1.97
VAT1Q99536 AC096947.1-201ENST00000603233 470 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.76□□□□□ -1.97
VAT1Q99536 BNIP3P4-201ENST00000604946 565 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AL513477.2-201ENST00000607858 568 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 AC068831.7-201ENST00000616954 363 ntBASIC2.76□□□□□ -1.97
VAT1Q99536 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.76□□□□□ -1.97
VAT1Q99536 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
VAT1Q99536 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
VAT1Q99536 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.76□□□□□ -1.97
VAT1Q99536 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.76□□□□□ -1.97
VAT1Q99536 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
VAT1Q99536 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VAT1Q99536 MTND5P31-201ENST00000419366 1374 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VAT1Q99536 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VAT1Q99536 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.75□□□□□ -1.97
VAT1Q99536 RNU6-1249P-201ENST00000363237 111 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.75□□□□□ -1.97
VAT1Q99536 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
VAT1Q99536 SNORA26.7-201ENST00000391288 122 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 MIR887-201ENST00000401258 79 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 RPS20P25-201ENST00000412447 352 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 AC009237.2-201ENST00000421358 284 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 HSPE1P1-201ENST00000421494 318 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 AL139281.1-201ENST00000422120 335 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.75□□□□□ -1.97
VAT1Q99536 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.75□□□□□ -1.97
VAT1Q99536 AC104332.2-201ENST00000429959 156 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 PTP4A1P3-201ENST00000433661 420 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 AL691517.1-201ENST00000440833 1235 ntBASIC2.75□□□□□ -1.97
VAT1Q99536 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.75□□□□□ -1.97
VAT1Q99536 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms