Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL353691.1-201ENST00000451332 387 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 IFNWP4-201ENST00000453148 294 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 C1DP4-201ENST00000455429 424 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RPL38P1-201ENST00000460914 211 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC021382.1-201ENST00000483523 359 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RPS3AP14-201ENST00000483907 780 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RN7SL812P-201ENST00000493791 279 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 COX7A2P2-201ENST00000505291 250 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 ARL2BPP6-201ENST00000512757 439 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 RNU6-27P-201ENST00000516146 107 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AP003497.1-201ENST00000528472 562 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AL356432.3-201ENST00000568952 465 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC091178.1-203ENST00000584586 279 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC121334.2-201ENST00000605387 271 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC055876.5-201ENST00000605667 259 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC011816.2-201ENST00000607089 556 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC012150.2-201ENST00000621300 544 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AL359880.1-201ENST00000621879 266 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 AC091925.2-201ENST00000625059 256 ntBASIC4.57□□□□□ -1.68
TDP1Q9NUW8 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
TDP1Q9NUW8 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC024560.2-201ENST00000507981 1497 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 MT-TC-201ENST00000387405 66 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 U3.20-201ENST00000390909 217 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 RPL23AP32-201ENST00000395315 459 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 CALM2P3-201ENST00000400429 449 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 CIR1P3-201ENST00000405137 479 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 RN7SKP235-201ENST00000410662 305 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 RNU2-8P-201ENST00000410727 190 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 MTND3P17-201ENST00000416968 344 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC233728.2-201ENST00000425348 757 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 MTND1P2-201ENST00000430604 821 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 RPL23AP52-201ENST00000439311 478 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC104308.1-201ENST00000454621 333 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 SAP18P1-201ENST00000512058 390 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 FAM92A1P1-201ENST00000528023 890 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC107954.1-201ENST00000565906 727 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 MIR3118-1-201ENST00000581787 76 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 HMGB2P1-201ENST00000591146 634 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 IMMP1LP1-201ENST00000605170 488 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC008966.2-201ENST00000606157 453 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC007014.2-201ENST00000615581 479 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AL356321.1-201ENST00000621360 228 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC091953.2-201ENST00000623979 160 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 MIR492-201ENST00000638676 116 ntBASIC4.56□□□□□ -1.68
TDP1Q9NUW8 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.56□□□□□ -1.68
TDP1Q9NUW8 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC004520.1-201ENST00000608362 1413 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AP001642.1-201ENST00000624727 2117 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 ZNF33CP-201ENST00000432492 2030 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 OR5J1P-201ENST00000313544 939 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 RNU5E-1-201ENST00000362477 120 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms