Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A1P12109 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A1P12109 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A1P12109 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A1P12109 RAD23BP3-201ENST00000454157 1152 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 BX322784.1-201ENST00000455793 1077 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 PMCHL2-203ENST00000457791 237 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 SNORD108-201ENST00000459332 71 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 AC087312.1-201ENST00000471411 480 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 RBM43P1-201ENST00000476891 1081 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 AC025164.1-201ENST00000496249 478 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.11□□□□□ -1.59
COL6A1P12109 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A1P12109 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A1P12109 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A1P12109 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 AC012507.3-201ENST00000603556 477 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 AC024614.3-201ENST00000637860 256 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
COL6A1P12109 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A1P12109 Z95331.1-201ENST00000623075 23112 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 OR51H2P-202ENST00000641424 3046 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A1P12109 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A1P12109 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A1P12109 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A1P12109 AC007390.2-201ENST00000606229 3803 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 A2MP1-204ENST00000566278 4130 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A1P12109 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
COL6A1P12109 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 MIR372-201ENST00000362225 67 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.1□□□□□ -1.59
COL6A1P12109 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.1□□□□□ -1.59
COL6A1P12109 Y_RNA.409-201ENST00000383990 98 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 Y_RNA.509-201ENST00000384506 99 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 SNRPEP2-201ENST00000397592 279 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 RPL31P1-201ENST00000398116 372 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AL121972.1-201ENST00000402023 252 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 SNORA11.1-201ENST00000408133 129 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.1□□□□□ -1.59
COL6A1P12109 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 NMD3P1-201ENST00000439704 1488 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.1□□□□□ -1.59
COL6A1P12109 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 MTCO1P27-201ENST00000448269 226 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.1□□□□□ -1.59
COL6A1P12109 HMGN3P1-201ENST00000453847 193 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 C1DP4-201ENST00000455429 424 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC090142.1-201ENST00000465776 462 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 RPL7L1P8-201ENST00000469911 741 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 PARP4P3-201ENST00000510265 317 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 CENPUP1-201ENST00000526649 1202 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AP003034.1-201ENST00000534621 422 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 AL845331.3-202ENST00000562856 261 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC138915.3-201ENST00000562908 1389 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.1□□□□□ -1.59
COL6A1P12109 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.1□□□□□ -1.59
COL6A1P12109 AC009643.2-201ENST00000603543 1448 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC024220.1-201ENST00000603675 484 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC009159.1-201ENST00000618386 642 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC010338.1-201ENST00000621823 717 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 AC006065.6-201ENST00000625201 545 ntBASIC5.1□□□□□ -1.59
COL6A1P12109 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.1□□□□□ -1.59
COL6A1P12109 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.1□□□□□ -1.59
COL6A1P12109 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL6A1P12109 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A1P12109 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.09□□□□□ -1.59
COL6A1P12109 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 191 ms