Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC9.7□□□□□ -0.86
MSH5O43196 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC9.7□□□□□ -0.86
MSH5O43196 Y_RNA.426-201ENST00000384068 113 ntBASIC9.7□□□□□ -0.86
MSH5O43196 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
MSH5O43196 AL359694.1-201ENST00000403247 604 ntBASIC9.7□□□□□ -0.86
MSH5O43196 AL355862.1-201ENST00000412705 353 ntBASIC9.7□□□□□ -0.86
MSH5O43196 AL451062.2-201ENST00000427515 271 ntBASIC9.7□□□□□ -0.86
MSH5O43196 AC064862.5-201ENST00000440618 334 ntBASIC9.7□□□□□ -0.86
MSH5O43196 PFN1P11-201ENST00000445829 389 ntBASIC9.7□□□□□ -0.86
MSH5O43196 SNRPGP8-201ENST00000454064 226 ntBASIC9.7□□□□□ -0.86
MSH5O43196 RN7SL233P-201ENST00000469988 277 ntBASIC9.7□□□□□ -0.86
MSH5O43196 RN7SL152P-201ENST00000484176 298 ntBASIC9.7□□□□□ -0.86
MSH5O43196 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC9.7□□□□□ -0.86
MSH5O43196 RNU4ATAC10P-201ENST00000516967 122 ntBASIC9.7□□□□□ -0.86
MSH5O43196 AC015819.1-201ENST00000613588 663 ntBASIC9.7□□□□□ -0.86
MSH5O43196 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC9.7□□□□□ -0.86
MSH5O43196 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC9.7□□□□□ -0.86
MSH5O43196 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC9.7□□□□□ -0.86
MSH5O43196 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC9.7□□□□□ -0.86
MSH5O43196 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
MSH5O43196 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
MSH5O43196 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
MSH5O43196 RNU6-1310P-201ENST00000384153 107 ntBASIC9.69□□□□□ -0.86
MSH5O43196 MIR181B1-201ENST00000385240 110 ntBASIC9.69□□□□□ -0.86
MSH5O43196 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC9.69□□□□□ -0.86
MSH5O43196 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
MSH5O43196 ARSFP1-201ENST00000398758 477 ntBASIC9.69□□□□□ -0.86
MSH5O43196 AL592045.1-201ENST00000429867 352 ntBASIC9.69□□□□□ -0.86
MSH5O43196 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
MSH5O43196 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC9.69□□□□□ -0.86
MSH5O43196 RN7SL168P-201ENST00000463821 279 ntBASIC9.69□□□□□ -0.86
MSH5O43196 RN7SL799P-201ENST00000475891 298 ntBASIC9.69□□□□□ -0.86
MSH5O43196 RPS14P8-201ENST00000478778 369 ntBASIC9.69□□□□□ -0.86
MSH5O43196 COX6CP6-201ENST00000490840 228 ntBASIC9.69□□□□□ -0.86
MSH5O43196 AC008040.4-201ENST00000494834 768 ntBASIC9.69□□□□□ -0.86
MSH5O43196 AC004980.4-201ENST00000513375 203 ntBASIC9.69□□□□□ -0.86
MSH5O43196 RNU6-267P-201ENST00000516714 103 ntBASIC9.69□□□□□ -0.86
MSH5O43196 RNU1-104P-201ENST00000517280 175 ntBASIC9.69□□□□□ -0.86
MSH5O43196 STK3-216ENST00000523601 3107 ntTSL 2 BASIC9.69□□□□□ -0.86
MSH5O43196 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC9.69□□□□□ -0.86
MSH5O43196 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC9.69□□□□□ -0.86
MSH5O43196 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC9.69□□□□□ -0.86
MSH5O43196 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC9.69□□□□□ -0.86
MSH5O43196 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC9.69□□□□□ -0.86
MSH5O43196 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
MSH5O43196 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
MSH5O43196 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC9.68□□□□□ -0.86
MSH5O43196 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
MSH5O43196 AC127070.3-201ENST00000503695 3263 ntBASIC9.68□□□□□ -0.86
MSH5O43196 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
MSH5O43196 TMC3-AS1-206ENST00000612811 2726 ntBASIC9.68□□□□□ -0.86
MSH5O43196 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 SPATA31B1P-201ENST00000434692 4016 ntBASIC9.68□□□□□ -0.86
MSH5O43196 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 Y_RNA.111-201ENST00000363248 100 ntBASIC9.68□□□□□ -0.86
MSH5O43196 RNU4-81P-201ENST00000363561 144 ntBASIC9.68□□□□□ -0.86
MSH5O43196 Y_RNA.362-201ENST00000365518 110 ntBASIC9.68□□□□□ -0.86
MSH5O43196 AL590682.1-201ENST00000437248 344 ntBASIC9.68□□□□□ -0.86
MSH5O43196 AL354714.3-201ENST00000447284 493 ntBASIC9.68□□□□□ -0.86
MSH5O43196 AC125388.1-201ENST00000459631 156 ntBASIC9.68□□□□□ -0.86
MSH5O43196 RNU6-27P-201ENST00000516146 107 ntBASIC9.68□□□□□ -0.86
MSH5O43196 RNU6-1315P-201ENST00000517187 99 ntBASIC9.68□□□□□ -0.86
MSH5O43196 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC9.68□□□□□ -0.86
MSH5O43196 SNX18P27-201ENST00000523611 779 ntBASIC9.68□□□□□ -0.86
MSH5O43196 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
MSH5O43196 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
MSH5O43196 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
MSH5O43196 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC9.67□□□□□ -0.86
MSH5O43196 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
MSH5O43196 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
MSH5O43196 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC9.67□□□□□ -0.86
MSH5O43196 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
MSH5O43196 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms