Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 ID1-201ENST00000376105 1233 ntBASIC17.13■□□□□ 0.33
VSX1Q9NZR4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 NBPF21P-201ENST00000425093 1451 ntBASIC17.12■□□□□ 0.33
VSX1Q9NZR4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 FP475955.4-201ENST00000623131 1990 ntBASIC17.12■□□□□ 0.33
VSX1Q9NZR4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 AP003097.1-201ENST00000530657 1135 ntBASIC17.12■□□□□ 0.33
VSX1Q9NZR4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.12■□□□□ 0.33
VSX1Q9NZR4 CROCCP3-202ENST00000420820 1947 ntBASIC17.11■□□□□ 0.33
VSX1Q9NZR4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 IRX1P1-201ENST00000438849 1838 ntBASIC17.11■□□□□ 0.33
VSX1Q9NZR4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 AC006333.2-201ENST00000607957 2099 ntBASIC17.11■□□□□ 0.33
VSX1Q9NZR4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX1Q9NZR4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms