Protein–RNA interactions for Protein: Q9NX63

CHCHD3, MICOS complex subunit MIC19, humanhuman

Known RBP Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3Q9NX63 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 AC105265.2-201ENST00000467189 838 ntBASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 AL355001.2-201ENST00000620617 1191 ntBASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHCHD3Q9NX63 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 DUX4L2-201ENST00000561772 1275 ntBASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 DUX4L6-201ENST00000626483 1275 ntBASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 DUX4L1-201ENST00000627662 1275 ntBASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 DUX4L8-201ENST00000629013 1275 ntBASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 DUX4L3-201ENST00000630187 1275 ntBASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 DUX4L7-201ENST00000630678 1275 ntBASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 DUX4L5-201ENST00000630834 1275 ntBASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 PCDHA12-202ENST00000613593 2588 ntBASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CHCHD3Q9NX63 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 RASA4CP-201ENST00000424092 1398 ntBASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHCHD3Q9NX63 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHCHD3Q9NX63 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms