Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 FAM8A6P-201ENST00000407496 1135 ntBASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 AL160286.2-201ENST00000567150 934 ntBASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 AC099778.1-201ENST00000568593 1911 ntBASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 AP001271.2-201ENST00000624018 1556 ntBASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TM9SF3Q9HD45 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 AC112907.3-201ENST00000577781 2400 ntBASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 YBX1P2-201ENST00000489612 999 ntBASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 AL023803.3-201ENST00000615559 522 ntBASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 AL358472.4-201ENST00000633140 710 ntBASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TM9SF3Q9HD45 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 TSPY17P-201ENST00000450329 467 ntBASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 COX11P1-201ENST00000489116 835 ntBASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 MYC-208ENST00000641036 567 ntBASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
TM9SF3Q9HD45 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 TSPY5P-201ENST00000426936 936 ntBASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 AC091076.1-201ENST00000610741 619 ntBASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TM9SF3Q9HD45 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms