Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.32■□□□□ 0.52
PIF1Q9H611 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PIF1Q9H611 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PIF1Q9H611 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PIF1Q9H611 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PIF1Q9H611 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PIF1Q9H611 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PIF1Q9H611 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PIF1Q9H611 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PIF1Q9H611 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PIF1Q9H611 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.31■□□□□ 0.52
PIF1Q9H611 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
PIF1Q9H611 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.31■□□□□ 0.52
PIF1Q9H611 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.31■□□□□ 0.52
PIF1Q9H611 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.31■□□□□ 0.52
PIF1Q9H611 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 AC133552.2-202ENST00000575694 574 ntBASIC18.31■□□□□ 0.52
PIF1Q9H611 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.31■□□□□ 0.52
PIF1Q9H611 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.31■□□□□ 0.52
PIF1Q9H611 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.31■□□□□ 0.52
PIF1Q9H611 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.31■□□□□ 0.52
PIF1Q9H611 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 LETM1P2-201ENST00000597330 2178 ntBASIC18.31■□□□□ 0.52
PIF1Q9H611 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PIF1Q9H611 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PIF1Q9H611 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.31■□□□□ 0.52
PIF1Q9H611 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PIF1Q9H611 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PIF1Q9H611 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.3■□□□□ 0.52
PIF1Q9H611 WIZP1-201ENST00000531444 2299 ntBASIC18.3■□□□□ 0.52
PIF1Q9H611 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
PIF1Q9H611 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.3■□□□□ 0.52
PIF1Q9H611 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.3■□□□□ 0.52
PIF1Q9H611 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PIF1Q9H611 FZD10-202ENST00000539839 3282 ntBASIC18.3■□□□□ 0.52
PIF1Q9H611 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.3■□□□□ 0.52
PIF1Q9H611 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PIF1Q9H611 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.3■□□□□ 0.52
PIF1Q9H611 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.3■□□□□ 0.52
PIF1Q9H611 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.3■□□□□ 0.52
PIF1Q9H611 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.3■□□□□ 0.52
PIF1Q9H611 AC005181.1-201ENST00000604782 1256 ntBASIC18.3■□□□□ 0.52
PIF1Q9H611 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.3■□□□□ 0.52
PIF1Q9H611 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.3■□□□□ 0.52
PIF1Q9H611 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PIF1Q9H611 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.3■□□□□ 0.52
PIF1Q9H611 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PIF1Q9H611 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.29■□□□□ 0.52
PIF1Q9H611 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PIF1Q9H611 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.29■□□□□ 0.52
PIF1Q9H611 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 ZNF815P-204ENST00000434898 1737 ntBASIC18.29■□□□□ 0.52
PIF1Q9H611 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.29■□□□□ 0.52
PIF1Q9H611 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PIF1Q9H611 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.29■□□□□ 0.52
PIF1Q9H611 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.29■□□□□ 0.52
PIF1Q9H611 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PIF1Q9H611 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 FP475955.4-201ENST00000623131 1990 ntBASIC18.29■□□□□ 0.52
PIF1Q9H611 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.29■□□□□ 0.52
PIF1Q9H611 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PIF1Q9H611 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms