Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 TSPY5P-201ENST00000426936 936 ntBASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 AL023973.1-201ENST00000624619 620 ntBASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PAAF1Q9BRP4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 FAM8A6P-201ENST00000407496 1135 ntBASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 AL441883.1-201ENST00000566170 1045 ntBASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 MYC-208ENST00000641036 567 ntBASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PAAF1Q9BRP4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 AC008622.2-201ENST00000617006 1229 ntBASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
PAAF1Q9BRP4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.46■□□□□ 0.87
PAAF1Q9BRP4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms