Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC064862.7-201ENST00000604520 867 ntBASIC31.88■■■□□ 2.69
IFT140Q96RY7 HOTTIP_1.1-201ENST00000620415 57 ntBASIC31.88■■■□□ 2.69
IFT140Q96RY7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC31.87■■■□□ 2.69
IFT140Q96RY7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
IFT140Q96RY7 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
IFT140Q96RY7 BX842568.4-201ENST00000421222 227 ntBASIC31.87■■■□□ 2.69
IFT140Q96RY7 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC31.87■■■□□ 2.69
IFT140Q96RY7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC31.87■■■□□ 2.69
IFT140Q96RY7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC31.87■■■□□ 2.69
IFT140Q96RY7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
IFT140Q96RY7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC31.87■■■□□ 2.69
IFT140Q96RY7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC31.87■■■□□ 2.69
IFT140Q96RY7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC31.87■■■□□ 2.69
IFT140Q96RY7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
IFT140Q96RY7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
IFT140Q96RY7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
IFT140Q96RY7 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
IFT140Q96RY7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC31.86■■■□□ 2.69
IFT140Q96RY7 SMG8-203ENST00000578922 2178 ntBASIC31.86■■■□□ 2.69
IFT140Q96RY7 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
IFT140Q96RY7 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
IFT140Q96RY7 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
IFT140Q96RY7 GRAMD4P1-201ENST00000435181 1110 ntBASIC31.86■■■□□ 2.69
IFT140Q96RY7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC31.86■■■□□ 2.69
IFT140Q96RY7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
IFT140Q96RY7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC31.86■■■□□ 2.69
IFT140Q96RY7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
IFT140Q96RY7 ANKRD18DP-204ENST00000455355 1975 ntBASIC31.86■■■□□ 2.69
IFT140Q96RY7 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC31.85■■■□□ 2.69
IFT140Q96RY7 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC31.85■■■□□ 2.69
IFT140Q96RY7 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
IFT140Q96RY7 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC31.85■■■□□ 2.69
IFT140Q96RY7 Z69720.1-201ENST00000601483 472 ntBASIC31.85■■■□□ 2.69
IFT140Q96RY7 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC31.85■■■□□ 2.69
IFT140Q96RY7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC31.85■■■□□ 2.69
IFT140Q96RY7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC31.85■■■□□ 2.69
IFT140Q96RY7 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC31.85■■■□□ 2.69
IFT140Q96RY7 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
IFT140Q96RY7 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
IFT140Q96RY7 COX10-202ENST00000429152 875 ntTSL 2 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
IFT140Q96RY7 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
IFT140Q96RY7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
IFT140Q96RY7 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 AC106730.1-201ENST00000566722 1090 ntBASIC31.84■■■□□ 2.69
IFT140Q96RY7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC31.84■■■□□ 2.69
IFT140Q96RY7 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
IFT140Q96RY7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
IFT140Q96RY7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
IFT140Q96RY7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC31.83■■■□□ 2.69
IFT140Q96RY7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC31.83■■■□□ 2.69
IFT140Q96RY7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
IFT140Q96RY7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC31.83■■■□□ 2.69
IFT140Q96RY7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
IFT140Q96RY7 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC31.83■■■□□ 2.69
IFT140Q96RY7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
IFT140Q96RY7 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
IFT140Q96RY7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC31.83■■■□□ 2.69
IFT140Q96RY7 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC31.83■■■□□ 2.69
IFT140Q96RY7 POLD2P1-201ENST00000511220 997 ntBASIC31.83■■■□□ 2.69
IFT140Q96RY7 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC31.83■■■□□ 2.69
IFT140Q96RY7 MIR7706-201ENST00000613747 67 ntBASIC31.83■■■□□ 2.69
IFT140Q96RY7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC31.83■■■□□ 2.69
IFT140Q96RY7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
IFT140Q96RY7 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC31.82■■■□□ 2.69
IFT140Q96RY7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC31.82■■■□□ 2.68
IFT140Q96RY7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC31.82■■■□□ 2.68
IFT140Q96RY7 AC243591.1-201ENST00000452967 1364 ntBASIC31.82■■■□□ 2.68
IFT140Q96RY7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
IFT140Q96RY7 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
IFT140Q96RY7 KRT18P67-201ENST00000432816 1264 ntBASIC31.82■■■□□ 2.68
IFT140Q96RY7 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC31.82■■■□□ 2.68
IFT140Q96RY7 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC31.82■■■□□ 2.68
IFT140Q96RY7 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
IFT140Q96RY7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
IFT140Q96RY7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
IFT140Q96RY7 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
IFT140Q96RY7 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC31.81■■■□□ 2.68
IFT140Q96RY7 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
IFT140Q96RY7 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC31.81■■■□□ 2.68
IFT140Q96RY7 RNPS1P1-201ENST00000507437 918 ntBASIC31.81■■■□□ 2.68
IFT140Q96RY7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC31.81■■■□□ 2.68
IFT140Q96RY7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC31.81■■■□□ 2.68
IFT140Q96RY7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
IFT140Q96RY7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
IFT140Q96RY7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
IFT140Q96RY7 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC31.8■■■□□ 2.68
IFT140Q96RY7 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC31.8■■■□□ 2.68
IFT140Q96RY7 CDV3-207ENST00000508481 661 ntTSL 3 BASIC31.8■■■□□ 2.68
IFT140Q96RY7 AC112497.1-201ENST00000624824 639 ntBASIC31.8■■■□□ 2.68
IFT140Q96RY7 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC31.8■■■□□ 2.68
IFT140Q96RY7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
IFT140Q96RY7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
IFT140Q96RY7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC31.8■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms