Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 AC073195.1-201ENST00000607241 877 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 AC131212.4-201ENST00000623606 975 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 TMEM191A-211ENST00000637163 1067 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 IRX1P1-201ENST00000438849 1838 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 AL135905.2-201ENST00000584934 1404 ntBASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 TSPY21P-201ENST00000433481 731 ntBASIC14.85□□□□□ -0.03
CCDC140Q96MF4 TSPY23P-201ENST00000440136 739 ntBASIC14.85□□□□□ -0.03
CCDC140Q96MF4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CR392000.1-201ENST00000624770 1228 ntBASIC14.85□□□□□ -0.03
CCDC140Q96MF4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC140Q96MF4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 AC026271.3-201ENST00000571884 352 ntBASIC14.84□□□□□ -0.03
CCDC140Q96MF4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC140Q96MF4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC14.83□□□□□ -0.03
CCDC140Q96MF4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.03
CCDC140Q96MF4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC140Q96MF4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC140Q96MF4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.83□□□□□ -0.03
CCDC140Q96MF4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms