Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.04■■□□□ 1.6
RTF1Q92541 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTF1Q92541 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC25.04■■□□□ 1.6
RTF1Q92541 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC25.04■■□□□ 1.6
RTF1Q92541 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
RTF1Q92541 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTF1Q92541 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC25.04■■□□□ 1.6
RTF1Q92541 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTF1Q92541 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTF1Q92541 AC125437.2-201ENST00000625180 2167 ntBASIC25.04■■□□□ 1.6
RTF1Q92541 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
RTF1Q92541 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTF1Q92541 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC25.04■■□□□ 1.6
RTF1Q92541 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC25.03■■□□□ 1.6
RTF1Q92541 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
RTF1Q92541 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC25.03■■□□□ 1.6
RTF1Q92541 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC25.03■■□□□ 1.6
RTF1Q92541 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC25.03■■□□□ 1.6
RTF1Q92541 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 TSPY21P-201ENST00000433481 731 ntBASIC25.03■■□□□ 1.6
RTF1Q92541 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC25.03■■□□□ 1.6
RTF1Q92541 AC104076.2-201ENST00000448912 469 ntBASIC25.03■■□□□ 1.6
RTF1Q92541 GXYLT1P6-201ENST00000456472 1187 ntBASIC25.03■■□□□ 1.6
RTF1Q92541 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC25.03■■□□□ 1.6
RTF1Q92541 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC25.03■■□□□ 1.6
RTF1Q92541 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC25.03■■□□□ 1.6
RTF1Q92541 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC25.03■■□□□ 1.6
RTF1Q92541 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC25.03■■□□□ 1.6
RTF1Q92541 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC25.03■■□□□ 1.6
RTF1Q92541 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC25.03■■□□□ 1.6
RTF1Q92541 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RTF1Q92541 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTF1Q92541 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTF1Q92541 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC25.02■■□□□ 1.6
RTF1Q92541 TSPY23P-201ENST00000440136 739 ntBASIC25.02■■□□□ 1.6
RTF1Q92541 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTF1Q92541 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC25.02■■□□□ 1.6
RTF1Q92541 AL590326.2-201ENST00000625139 305 ntBASIC25.02■■□□□ 1.6
RTF1Q92541 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTF1Q92541 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RTF1Q92541 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTF1Q92541 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RTF1Q92541 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
RTF1Q92541 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTF1Q92541 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC25.01■■□□□ 1.59
RTF1Q92541 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC25.01■■□□□ 1.59
RTF1Q92541 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
RTF1Q92541 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC25.01■■□□□ 1.59
RTF1Q92541 BX664615.1-201ENST00000443558 458 ntBASIC25.01■■□□□ 1.59
RTF1Q92541 AP003041.3-201ENST00000527151 707 ntBASIC25.01■■□□□ 1.59
RTF1Q92541 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC25.01■■□□□ 1.59
RTF1Q92541 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC25.01■■□□□ 1.59
RTF1Q92541 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
RTF1Q92541 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
RTF1Q92541 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
RTF1Q92541 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RTF1Q92541 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC25.01■■□□□ 1.59
RTF1Q92541 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
RTF1Q92541 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
RTF1Q92541 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
RTF1Q92541 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC25■■□□□ 1.59
RTF1Q92541 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC25■■□□□ 1.59
RTF1Q92541 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC25■■□□□ 1.59
RTF1Q92541 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC25■■□□□ 1.59
RTF1Q92541 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
RTF1Q92541 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25■■□□□ 1.59
RTF1Q92541 DUX4L26-201ENST00000489078 1255 ntBASIC25■■□□□ 1.59
RTF1Q92541 AL445228.2-201ENST00000605589 952 ntBASIC25■■□□□ 1.59
RTF1Q92541 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC25■■□□□ 1.59
RTF1Q92541 AC006011.2-201ENST00000621313 1158 ntBASIC25■■□□□ 1.59
RTF1Q92541 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25■■□□□ 1.59
RTF1Q92541 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC25■■□□□ 1.59
RTF1Q92541 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
RTF1Q92541 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC25■■□□□ 1.59
RTF1Q92541 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC25■■□□□ 1.59
RTF1Q92541 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC25■■□□□ 1.59
RTF1Q92541 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RTF1Q92541 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RTF1Q92541 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RTF1Q92541 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC24.99■■□□□ 1.59
RTF1Q92541 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RTF1Q92541 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms