Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 AL136038.3-201ENST00000561909 1096 ntBASIC18.42■□□□□ 0.54
COL28A1Q2UY09 AC111152.3-201ENST00000569699 673 ntBASIC18.42■□□□□ 0.54
COL28A1Q2UY09 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.42■□□□□ 0.54
COL28A1Q2UY09 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 DPP3P2-201ENST00000416030 1696 ntBASIC18.41■□□□□ 0.54
COL28A1Q2UY09 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL28A1Q2UY09 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 AC007663.1-201ENST00000438948 1240 ntBASIC18.4■□□□□ 0.54
COL28A1Q2UY09 KRT18P38-201ENST00000449496 1282 ntBASIC18.4■□□□□ 0.54
COL28A1Q2UY09 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 AL441883.1-201ENST00000566170 1045 ntBASIC18.4■□□□□ 0.54
COL28A1Q2UY09 C1QL1P1-201ENST00000568105 661 ntBASIC18.4■□□□□ 0.54
COL28A1Q2UY09 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 MIR3652-201ENST00000579335 131 ntBASIC18.4■□□□□ 0.54
COL28A1Q2UY09 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 AC010653.2-201ENST00000623505 997 ntBASIC18.4■□□□□ 0.54
COL28A1Q2UY09 AL023973.1-201ENST00000624619 620 ntBASIC18.4■□□□□ 0.54
COL28A1Q2UY09 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL28A1Q2UY09 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL28A1Q2UY09 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 AC004980.1-204ENST00000429707 299 ntBASIC18.39■□□□□ 0.53
COL28A1Q2UY09 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.39■□□□□ 0.53
COL28A1Q2UY09 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms