Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.17■□□□□ 0.34
H3F3AP84243 AC141586.3-201ENST00000562166 1838 ntBASIC17.17■□□□□ 0.34
H3F3AP84243 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.17■□□□□ 0.34
H3F3AP84243 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
H3F3AP84243 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.17■□□□□ 0.34
H3F3AP84243 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.17■□□□□ 0.34
H3F3AP84243 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.17■□□□□ 0.34
H3F3AP84243 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.17■□□□□ 0.34
H3F3AP84243 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.17■□□□□ 0.34
H3F3AP84243 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.17■□□□□ 0.34
H3F3AP84243 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.17■□□□□ 0.34
H3F3AP84243 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.17■□□□□ 0.34
H3F3AP84243 FSCN1P1-201ENST00000568912 1481 ntBASIC17.17■□□□□ 0.34
H3F3AP84243 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
H3F3AP84243 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
H3F3AP84243 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
H3F3AP84243 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
H3F3AP84243 TEX21P-204ENST00000641479 1693 ntBASIC17.16■□□□□ 0.34
H3F3AP84243 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
H3F3AP84243 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
H3F3AP84243 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.16■□□□□ 0.34
H3F3AP84243 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
H3F3AP84243 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
H3F3AP84243 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.16■□□□□ 0.34
H3F3AP84243 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
H3F3AP84243 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.16■□□□□ 0.34
H3F3AP84243 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.16■□□□□ 0.34
H3F3AP84243 AC004951.3-201ENST00000418645 1148 ntBASIC17.16■□□□□ 0.34
H3F3AP84243 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.16■□□□□ 0.34
H3F3AP84243 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.16■□□□□ 0.34
H3F3AP84243 B3GAT3P1-201ENST00000471720 806 ntBASIC17.16■□□□□ 0.34
H3F3AP84243 AC011506.1-201ENST00000474329 610 ntBASIC17.16■□□□□ 0.34
H3F3AP84243 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.16■□□□□ 0.34
H3F3AP84243 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.16■□□□□ 0.34
H3F3AP84243 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
H3F3AP84243 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
H3F3AP84243 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.16■□□□□ 0.34
H3F3AP84243 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
H3F3AP84243 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
H3F3AP84243 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
H3F3AP84243 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.15■□□□□ 0.34
H3F3AP84243 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.15■□□□□ 0.34
H3F3AP84243 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.15■□□□□ 0.34
H3F3AP84243 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
H3F3AP84243 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.15■□□□□ 0.34
H3F3AP84243 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
H3F3AP84243 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.15■□□□□ 0.34
H3F3AP84243 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.15■□□□□ 0.34
H3F3AP84243 TSPY21P-201ENST00000433481 731 ntBASIC17.15■□□□□ 0.34
H3F3AP84243 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 AC091390.4-202ENST00000476426 537 ntBASIC17.15■□□□□ 0.34
H3F3AP84243 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.15■□□□□ 0.34
H3F3AP84243 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.15■□□□□ 0.34
H3F3AP84243 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.15■□□□□ 0.34
H3F3AP84243 AC026471.5-201ENST00000615068 467 ntBASIC17.15■□□□□ 0.34
H3F3AP84243 MIR6786-201ENST00000616843 113 ntBASIC17.15■□□□□ 0.34
H3F3AP84243 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.15■□□□□ 0.34
H3F3AP84243 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
H3F3AP84243 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
H3F3AP84243 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
H3F3AP84243 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.14■□□□□ 0.33
H3F3AP84243 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
H3F3AP84243 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.14■□□□□ 0.33
H3F3AP84243 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
H3F3AP84243 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
H3F3AP84243 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
H3F3AP84243 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
H3F3AP84243 AC008040.2-201ENST00000461049 708 ntBASIC17.14■□□□□ 0.33
H3F3AP84243 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.14■□□□□ 0.33
H3F3AP84243 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.14■□□□□ 0.33
H3F3AP84243 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
H3F3AP84243 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.14■□□□□ 0.33
H3F3AP84243 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.14■□□□□ 0.33
H3F3AP84243 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.14■□□□□ 0.33
H3F3AP84243 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
H3F3AP84243 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms