Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.6■□□□□ 0.57
HNF4AP41235 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.6■□□□□ 0.57
HNF4AP41235 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.6■□□□□ 0.57
HNF4AP41235 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.6■□□□□ 0.57
HNF4AP41235 C1QL1P1-201ENST00000568105 661 ntBASIC18.6■□□□□ 0.57
HNF4AP41235 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.6■□□□□ 0.57
HNF4AP41235 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 AP000974.1-201ENST00000623909 2387 ntBASIC18.6■□□□□ 0.57
HNF4AP41235 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HNF4AP41235 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.6■□□□□ 0.57
HNF4AP41235 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HNF4AP41235 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.6■□□□□ 0.57
HNF4AP41235 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.59■□□□□ 0.57
HNF4AP41235 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.59■□□□□ 0.57
HNF4AP41235 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.59■□□□□ 0.57
HNF4AP41235 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
HNF4AP41235 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.59■□□□□ 0.57
HNF4AP41235 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.59■□□□□ 0.57
HNF4AP41235 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
HNF4AP41235 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
HNF4AP41235 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.59■□□□□ 0.57
HNF4AP41235 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.59■□□□□ 0.57
HNF4AP41235 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HNF4AP41235 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.59■□□□□ 0.57
HNF4AP41235 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.59■□□□□ 0.57
HNF4AP41235 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.59■□□□□ 0.57
HNF4AP41235 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.59■□□□□ 0.57
HNF4AP41235 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HNF4AP41235 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.59■□□□□ 0.57
HNF4AP41235 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HNF4AP41235 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HNF4AP41235 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
HNF4AP41235 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.58■□□□□ 0.57
HNF4AP41235 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
HNF4AP41235 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HNF4AP41235 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
HNF4AP41235 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
HNF4AP41235 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
HNF4AP41235 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.58■□□□□ 0.56
HNF4AP41235 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.58■□□□□ 0.56
HNF4AP41235 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.58■□□□□ 0.56
HNF4AP41235 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
HNF4AP41235 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
HNF4AP41235 AC133681.1-201ENST00000465482 601 ntBASIC18.58■□□□□ 0.56
HNF4AP41235 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.58■□□□□ 0.56
HNF4AP41235 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.58■□□□□ 0.56
HNF4AP41235 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.58■□□□□ 0.56
HNF4AP41235 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
HNF4AP41235 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.58■□□□□ 0.56
HNF4AP41235 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HNF4AP41235 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 AC098818.2-201ENST00000564925 2320 ntBASIC18.57■□□□□ 0.56
HNF4AP41235 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.57■□□□□ 0.56
HNF4AP41235 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
HNF4AP41235 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
HNF4AP41235 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
HNF4AP41235 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.57■□□□□ 0.56
HNF4AP41235 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HNF4AP41235 GCSHP5-201ENST00000443090 522 ntBASIC18.57■□□□□ 0.56
HNF4AP41235 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.57■□□□□ 0.56
HNF4AP41235 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms