Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.1■□□□□ 0.49
MT-ND1P03886 AC010980.2-201ENST00000587099 1412 ntBASIC18.1■□□□□ 0.49
MT-ND1P03886 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MT-ND1P03886 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MT-ND1P03886 AL355472.2-201ENST00000422958 438 ntBASIC18.1■□□□□ 0.49
MT-ND1P03886 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MT-ND1P03886 AC022517.1-201ENST00000592429 346 ntBASIC18.1■□□□□ 0.49
MT-ND1P03886 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.1■□□□□ 0.49
MT-ND1P03886 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.1■□□□□ 0.49
MT-ND1P03886 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MT-ND1P03886 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
MT-ND1P03886 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.1■□□□□ 0.49
MT-ND1P03886 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MT-ND1P03886 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
MT-ND1P03886 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.1■□□□□ 0.49
MT-ND1P03886 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MT-ND1P03886 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.09■□□□□ 0.49
MT-ND1P03886 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
MT-ND1P03886 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
MT-ND1P03886 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.09■□□□□ 0.49
MT-ND1P03886 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MT-ND1P03886 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
MT-ND1P03886 AL512625.2-201ENST00000417533 625 ntBASIC18.09■□□□□ 0.49
MT-ND1P03886 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.09■□□□□ 0.49
MT-ND1P03886 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.09■□□□□ 0.49
MT-ND1P03886 AL589743.5-201ENST00000616611 1050 ntBASIC18.09■□□□□ 0.49
MT-ND1P03886 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
MT-ND1P03886 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MT-ND1P03886 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.09■□□□□ 0.49
MT-ND1P03886 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.09■□□□□ 0.49
MT-ND1P03886 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.08■□□□□ 0.49
MT-ND1P03886 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
MT-ND1P03886 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MT-ND1P03886 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
MT-ND1P03886 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.08■□□□□ 0.49
MT-ND1P03886 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
MT-ND1P03886 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
MT-ND1P03886 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.08■□□□□ 0.49
MT-ND1P03886 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
MT-ND1P03886 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.08■□□□□ 0.49
MT-ND1P03886 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.08■□□□□ 0.49
MT-ND1P03886 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MT-ND1P03886 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
MT-ND1P03886 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MT-ND1P03886 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.08■□□□□ 0.48
MT-ND1P03886 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.08■□□□□ 0.48
MT-ND1P03886 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MT-ND1P03886 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
MT-ND1P03886 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
MT-ND1P03886 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.08■□□□□ 0.48
MT-ND1P03886 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.08■□□□□ 0.48
MT-ND1P03886 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.08■□□□□ 0.48
MT-ND1P03886 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.08■□□□□ 0.48
MT-ND1P03886 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MT-ND1P03886 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
MT-ND1P03886 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.08■□□□□ 0.48
MT-ND1P03886 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
MT-ND1P03886 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
MT-ND1P03886 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MT-ND1P03886 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MT-ND1P03886 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.07■□□□□ 0.48
MT-ND1P03886 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
MT-ND1P03886 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.07■□□□□ 0.48
MT-ND1P03886 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.07■□□□□ 0.48
MT-ND1P03886 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.07■□□□□ 0.48
MT-ND1P03886 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.07■□□□□ 0.48
MT-ND1P03886 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
MT-ND1P03886 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
MT-ND1P03886 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.07■□□□□ 0.48
MT-ND1P03886 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MT-ND1P03886 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms