Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 AL450487.1-201ENST00000426799 995 ntBASIC24.64■■□□□ 1.54
PTCD1O75127 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.54
PTCD1O75127 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.64■■□□□ 1.54
PTCD1O75127 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PTCD1O75127 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
PTCD1O75127 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
PTCD1O75127 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
PTCD1O75127 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
PTCD1O75127 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC24.64■■□□□ 1.53
PTCD1O75127 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC24.64■■□□□ 1.53
PTCD1O75127 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
PTCD1O75127 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCD1O75127 AC099778.1-201ENST00000568593 1911 ntBASIC24.63■■□□□ 1.53
PTCD1O75127 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
PTCD1O75127 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
PTCD1O75127 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
PTCD1O75127 CLDN5-201ENST00000403084 2357 ntBASIC24.63■■□□□ 1.53
PTCD1O75127 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCD1O75127 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCD1O75127 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC24.63■■□□□ 1.53
PTCD1O75127 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCD1O75127 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.63■■□□□ 1.53
PTCD1O75127 SPDYE13P-201ENST00000445314 798 ntBASIC24.63■■□□□ 1.53
PTCD1O75127 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC24.63■■□□□ 1.53
PTCD1O75127 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PTCD1O75127 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC24.63■■□□□ 1.53
PTCD1O75127 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC24.63■■□□□ 1.53
PTCD1O75127 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PTCD1O75127 CR769767.2-201ENST00000622735 460 ntBASIC24.63■■□□□ 1.53
PTCD1O75127 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC24.63■■□□□ 1.53
PTCD1O75127 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCD1O75127 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCD1O75127 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC24.63■■□□□ 1.53
PTCD1O75127 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
PTCD1O75127 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
PTCD1O75127 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC24.62■■□□□ 1.53
PTCD1O75127 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC24.62■■□□□ 1.53
PTCD1O75127 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC24.62■■□□□ 1.53
PTCD1O75127 NDUFV2-AS1-203ENST00000608008 779 ntBASIC24.62■■□□□ 1.53
PTCD1O75127 AC012313.10-201ENST00000623509 926 ntBASIC24.62■■□□□ 1.53
PTCD1O75127 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PTCD1O75127 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
PTCD1O75127 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC24.62■■□□□ 1.53
PTCD1O75127 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC24.62■■□□□ 1.53
PTCD1O75127 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
PTCD1O75127 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PTCD1O75127 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
PTCD1O75127 GAD2-202ENST00000376248 680 ntTSL 5 BASIC24.61■■□□□ 1.53
PTCD1O75127 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
PTCD1O75127 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC24.61■■□□□ 1.53
PTCD1O75127 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 LINC01006-201ENST00000333319 2292 ntBASIC24.61■■□□□ 1.53
PTCD1O75127 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
PTCD1O75127 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC24.61■■□□□ 1.53
PTCD1O75127 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCD1O75127 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
PTCD1O75127 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC24.6■■□□□ 1.53
PTCD1O75127 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC24.6■■□□□ 1.53
PTCD1O75127 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC24.6■■□□□ 1.53
PTCD1O75127 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC24.6■■□□□ 1.53
PTCD1O75127 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC24.6■■□□□ 1.53
PTCD1O75127 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC24.6■■□□□ 1.53
PTCD1O75127 ILF2-202ENST00000368681 726 ntTSL 2 BASIC24.6■■□□□ 1.53
PTCD1O75127 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC24.6■■□□□ 1.53
PTCD1O75127 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC24.6■■□□□ 1.53
PTCD1O75127 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC24.6■■□□□ 1.53
PTCD1O75127 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 FGF14-AS2-201ENST00000606448 1074 ntBASIC24.6■■□□□ 1.53
PTCD1O75127 CLN6-214ENST00000636314 442 ntTSL 3 BASIC24.6■■□□□ 1.53
PTCD1O75127 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC24.6■■□□□ 1.53
PTCD1O75127 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC24.6■■□□□ 1.53
PTCD1O75127 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCD1O75127 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC24.6■■□□□ 1.53
PTCD1O75127 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
PTCD1O75127 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC24.59■■□□□ 1.53
PTCD1O75127 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
PTCD1O75127 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC24.59■■□□□ 1.53
PTCD1O75127 USP48-205ENST00000421625 2818 ntTSL 2 BASIC24.59■■□□□ 1.53
PTCD1O75127 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms