Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
SGCEO43556 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.96■□□□□ 0.3
SGCEO43556 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SGCEO43556 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SGCEO43556 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SGCEO43556 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SGCEO43556 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SGCEO43556 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
SGCEO43556 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SGCEO43556 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.95■□□□□ 0.3
SGCEO43556 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 KRASP1-201ENST00000407852 552 ntBASIC16.95■□□□□ 0.3
SGCEO43556 POU5F1P3-201ENST00000428824 1078 ntBASIC16.95■□□□□ 0.3
SGCEO43556 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 MIR4651-201ENST00000582622 73 ntBASIC16.95■□□□□ 0.3
SGCEO43556 AC073648.6-201ENST00000641589 218 ntBASIC16.95■□□□□ 0.3
SGCEO43556 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
SGCEO43556 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.95■□□□□ 0.3
SGCEO43556 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.95■□□□□ 0.3
SGCEO43556 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SGCEO43556 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.95■□□□□ 0.3
SGCEO43556 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
SGCEO43556 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SGCEO43556 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.94■□□□□ 0.3
SGCEO43556 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 LTB4R2-202ENST00000528054 3092 ntBASIC16.94■□□□□ 0.3
SGCEO43556 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.94■□□□□ 0.3
SGCEO43556 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SGCEO43556 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.94■□□□□ 0.3
SGCEO43556 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
SGCEO43556 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.94■□□□□ 0.3
SGCEO43556 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.94■□□□□ 0.3
SGCEO43556 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC16.94■□□□□ 0.3
SGCEO43556 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SGCEO43556 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.94■□□□□ 0.3
SGCEO43556 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SGCEO43556 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SGCEO43556 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
SGCEO43556 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SGCEO43556 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.93■□□□□ 0.3
SGCEO43556 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SGCEO43556 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.93■□□□□ 0.3
SGCEO43556 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.93■□□□□ 0.3
SGCEO43556 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SGCEO43556 AC128676.1-201ENST00000454392 318 ntBASIC16.93■□□□□ 0.3
SGCEO43556 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.93■□□□□ 0.3
SGCEO43556 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SGCEO43556 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SGCEO43556 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SGCEO43556 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.93■□□□□ 0.3
SGCEO43556 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SGCEO43556 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.93■□□□□ 0.3
SGCEO43556 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SGCEO43556 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SGCEO43556 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms