Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CBX4O00257 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
CBX4O00257 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CBX4O00257 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CBX4O00257 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CBX4O00257 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CBX4O00257 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CBX4O00257 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CBX4O00257 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CBX4O00257 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CBX4O00257 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.63■□□□□ 0.73
CBX4O00257 AC097488.1-201ENST00000507834 756 ntBASIC19.63■□□□□ 0.73
CBX4O00257 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.63■□□□□ 0.73
CBX4O00257 SLC25A1P4-201ENST00000567977 778 ntBASIC19.63■□□□□ 0.73
CBX4O00257 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.63■□□□□ 0.73
CBX4O00257 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.63■□□□□ 0.73
CBX4O00257 DGCR10-201ENST00000609839 495 ntBASIC19.63■□□□□ 0.73
CBX4O00257 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.63■□□□□ 0.73
CBX4O00257 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.63■□□□□ 0.73
CBX4O00257 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CBX4O00257 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.63■□□□□ 0.73
CBX4O00257 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.62■□□□□ 0.73
CBX4O00257 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.62■□□□□ 0.73
CBX4O00257 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CBX4O00257 MMP23A-201ENST00000234610 1017 ntBASIC19.62■□□□□ 0.73
CBX4O00257 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CBX4O00257 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.62■□□□□ 0.73
CBX4O00257 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.62■□□□□ 0.73
CBX4O00257 CRYGFP-201ENST00000418459 633 ntBASIC19.62■□□□□ 0.73
CBX4O00257 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.62■□□□□ 0.73
CBX4O00257 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.62■□□□□ 0.73
CBX4O00257 RN7SL850P-201ENST00000579959 291 ntBASIC19.62■□□□□ 0.73
CBX4O00257 AP000692.2-201ENST00000608391 879 ntBASIC19.62■□□□□ 0.73
CBX4O00257 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.62■□□□□ 0.73
CBX4O00257 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.62■□□□□ 0.73
CBX4O00257 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.62■□□□□ 0.73
CBX4O00257 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CBX4O00257 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.61■□□□□ 0.73
CBX4O00257 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CBX4O00257 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
CBX4O00257 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CBX4O00257 Z82202.1-201ENST00000623446 1880 ntBASIC19.61■□□□□ 0.73
CBX4O00257 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.61■□□□□ 0.73
CBX4O00257 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CBX4O00257 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.61■□□□□ 0.73
CBX4O00257 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.61■□□□□ 0.73
CBX4O00257 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.61■□□□□ 0.73
CBX4O00257 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.61■□□□□ 0.73
CBX4O00257 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.61■□□□□ 0.73
CBX4O00257 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.61■□□□□ 0.73
CBX4O00257 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CBX4O00257 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.6■□□□□ 0.73
CBX4O00257 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.6■□□□□ 0.73
CBX4O00257 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.6■□□□□ 0.73
CBX4O00257 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.6■□□□□ 0.73
CBX4O00257 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CBX4O00257 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CBX4O00257 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.6■□□□□ 0.73
CBX4O00257 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.6■□□□□ 0.73
CBX4O00257 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.6■□□□□ 0.73
CBX4O00257 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.6■□□□□ 0.73
CBX4O00257 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.6■□□□□ 0.73
CBX4O00257 FITM1-202ENST00000559294 800 ntBASIC19.6■□□□□ 0.73
CBX4O00257 AL445228.2-201ENST00000605589 952 ntBASIC19.6■□□□□ 0.73
CBX4O00257 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.6■□□□□ 0.73
CBX4O00257 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms