Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC9.8□□□□□ -0.84
MSH5O43196 ENSA-210ENST00000503241 574 ntTSL 3 BASIC9.8□□□□□ -0.84
MSH5O43196 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC9.8□□□□□ -0.84
MSH5O43196 RNU6-436P-201ENST00000516171 114 ntBASIC9.8□□□□□ -0.84
MSH5O43196 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC9.8□□□□□ -0.84
MSH5O43196 MIR4724-201ENST00000579485 89 ntBASIC9.8□□□□□ -0.84
MSH5O43196 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC9.8□□□□□ -0.84
MSH5O43196 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC9.8□□□□□ -0.84
MSH5O43196 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
MSH5O43196 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC9.8□□□□□ -0.84
MSH5O43196 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
MSH5O43196 AMPD1-201ENST00000369538 2392 ntAPPRIS ALT2 TSL 2 BASIC9.8□□□□□ -0.84
MSH5O43196 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC9.8□□□□□ -0.84
MSH5O43196 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC9.8□□□□□ -0.84
MSH5O43196 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC9.8□□□□□ -0.84
MSH5O43196 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
MSH5O43196 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 AP000866.6-201ENST00000638898 3579 ntBASIC9.79□□□□□ -0.84
MSH5O43196 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 AL121768.1-201ENST00000613917 2544 ntBASIC9.79□□□□□ -0.84
MSH5O43196 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC9.79□□□□□ -0.84
MSH5O43196 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC9.79□□□□□ -0.84
MSH5O43196 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 TINAG-203ENST00000370869 782 ntTSL 3 BASIC9.79□□□□□ -0.84
MSH5O43196 RNU1-11P-201ENST00000383975 164 ntBASIC9.79□□□□□ -0.84
MSH5O43196 SNORA10B-201ENST00000384458 133 ntBASIC9.79□□□□□ -0.84
MSH5O43196 Y_RNA.498-201ENST00000384460 102 ntBASIC9.79□□□□□ -0.84
MSH5O43196 HMGB1P27-201ENST00000431429 603 ntBASIC9.79□□□□□ -0.84
MSH5O43196 ANKRD54P1-201ENST00000433115 471 ntBASIC9.79□□□□□ -0.84
MSH5O43196 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC9.79□□□□□ -0.84
MSH5O43196 AL121908.1-201ENST00000443055 668 ntTSL 4 BASIC9.79□□□□□ -0.84
MSH5O43196 AC021074.2-201ENST00000468434 172 ntBASIC9.79□□□□□ -0.84
MSH5O43196 SNRPCP11-201ENST00000492453 205 ntBASIC9.79□□□□□ -0.84
MSH5O43196 RN7SKP258-201ENST00000517151 304 ntBASIC9.79□□□□□ -0.84
MSH5O43196 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC9.79□□□□□ -0.84
MSH5O43196 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC9.79□□□□□ -0.84
MSH5O43196 AC025588.3-201ENST00000604182 274 ntBASIC9.79□□□□□ -0.84
MSH5O43196 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC9.79□□□□□ -0.84
MSH5O43196 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
MSH5O43196 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
MSH5O43196 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC9.78□□□□□ -0.84
MSH5O43196 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC9.78□□□□□ -0.84
MSH5O43196 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC9.78□□□□□ -0.84
MSH5O43196 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
MSH5O43196 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC9.78□□□□□ -0.84
MSH5O43196 RNU6-652P-201ENST00000365488 107 ntBASIC9.78□□□□□ -0.84
MSH5O43196 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
MSH5O43196 RNU6-1286P-201ENST00000383871 107 ntBASIC9.78□□□□□ -0.84
MSH5O43196 TRAV8-3-201ENST00000390435 341 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
MSH5O43196 COX6A1P3-201ENST00000404167 293 ntBASIC9.78□□□□□ -0.84
MSH5O43196 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC9.78□□□□□ -0.84
MSH5O43196 AC096922.1-201ENST00000461635 651 ntBASIC9.78□□□□□ -0.84
MSH5O43196 APOA2-205ENST00000468465 421 ntTSL 2 BASIC9.78□□□□□ -0.84
MSH5O43196 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC9.78□□□□□ -0.84
MSH5O43196 ASB8-202ENST00000535055 657 ntTSL 2 BASIC9.78□□□□□ -0.84
MSH5O43196 AC006512.2-201ENST00000543250 486 ntBASIC9.78□□□□□ -0.84
MSH5O43196 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC9.78□□□□□ -0.84
MSH5O43196 IGKV2OR2-7-201ENST00000604652 304 ntBASIC9.78□□□□□ -0.84
MSH5O43196 AL034351.1-201ENST00000605288 668 ntBASIC9.78□□□□□ -0.84
MSH5O43196 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC9.78□□□□□ -0.84
MSH5O43196 RMST_8.1-201ENST00000610287 165 ntBASIC9.78□□□□□ -0.84
MSH5O43196 AL352984.2-202ENST00000613699 155 ntBASIC9.78□□□□□ -0.84
MSH5O43196 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC9.78□□□□□ -0.84
MSH5O43196 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC9.78□□□□□ -0.84
MSH5O43196 TPD52-202ENST00000379097 2563 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
MSH5O43196 TPD52-204ENST00000517427 2596 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
MSH5O43196 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC9.78□□□□□ -0.84
MSH5O43196 AC097634.1-201ENST00000604491 2467 ntBASIC9.78□□□□□ -0.84
MSH5O43196 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
MSH5O43196 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC9.78□□□□□ -0.84
MSH5O43196 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
MSH5O43196 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
MSH5O43196 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
MSH5O43196 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
MSH5O43196 PROS2P-201ENST00000474651 1951 ntBASIC9.77□□□□□ -0.84
MSH5O43196 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
MSH5O43196 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC9.77□□□□□ -0.85
MSH5O43196 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC9.77□□□□□ -0.85
MSH5O43196 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
MSH5O43196 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
MSH5O43196 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC9.77□□□□□ -0.85
MSH5O43196 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
MSH5O43196 AL162171.3-201ENST00000617439 3178 ntBASIC9.77□□□□□ -0.85
MSH5O43196 AC009831.5-201ENST00000624000 3189 ntBASIC9.77□□□□□ -0.85
MSH5O43196 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
MSH5O43196 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
MSH5O43196 AC004986.1-201ENST00000414855 607 ntBASIC9.77□□□□□ -0.85
MSH5O43196 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC9.77□□□□□ -0.85
MSH5O43196 AC090515.1-201ENST00000465295 476 ntBASIC9.77□□□□□ -0.85
MSH5O43196 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC9.77□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 205.6 ms