RNA–Protein interactions for RNA: ENST00000431429.1

HMGB1P27-201, Transcript of high mobility group box 1 pseudogene 27, humanhuman

BASIC

Gene HMGB1P27, Length 603 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P27-201ENST00000431429 AEBP2Q6ZN18 517 aaPredicted RBP13.88□□□□□ -0.19
HMGB1P27-201ENST00000431429 CHIC1Q5VXU3 224 aa13.86□□□□□ -0.19
HMGB1P27-201ENST00000431429 PHF23Q9BUL5 403 aaPredicted RBP12.26□□□□□ -0.45
HMGB1P27-201ENST00000431429 SENP3Q9H4L4 574 aaPredicted RBP11.66□□□□□ -0.54
HMGB1P27-201ENST00000431429 PLPPR3Q6T4P5 718 aa11.36□□□□□ -0.59
HMGB1P27-201ENST00000431429 FOXD1Q16676 465 aa10.81□□□□□ -0.68
HMGB1P27-201ENST00000431429 PPP6R1Q9UPN7 881 aa10.68□□□□□ -0.7
HMGB1P27-201ENST00000431429 ADRA2BP18089 450 aa10.65□□□□□ -0.7
HMGB1P27-201ENST00000431429 KCNA4P22459 653 aa10.21□□□□□ -0.77
HMGB1P27-201ENST00000431429 PIAS4Q8N2W9 510 aaPredicted RBP10.2□□□□□ -0.78
HMGB1P27-201ENST00000431429 PPP4R3CPQ6ZMV5 832 aa10.05□□□□□ -0.8
HMGB1P27-201ENST00000431429 NCBP3Q53F19 620 aaKnown RBP9.83□□□□□ -0.84
HMGB1P27-201ENST00000431429 MSH5O43196 834 aa9.79□□□□□ -0.84
HMGB1P27-201ENST00000431429 EHMT2Q96KQ7 1210 aa9.78□□□□□ -0.84
HMGB1P27-201ENST00000431429 NPM3O75607 178 aaKnown RBP9.77□□□□□ -0.85
HMGB1P27-201ENST00000431429 SLC4A1APQ9BWU0 796 aaKnown RBP9.74□□□□□ -0.85
HMGB1P27-201ENST00000431429 CNKSR2Q8WXI2 1034 aa9.71□□□□□ -0.86
HMGB1P27-201ENST00000431429 SCAF1Q9H7N4 1312 aaKnown RBP9.67□□□□□ -0.86
HMGB1P27-201ENST00000431429 CSRNP3Q8WYN3 585 aa9.65□□□□□ -0.86
HMGB1P27-201ENST00000431429 DNAJC5BQ9UF47 199 aa9.6□□□□□ -0.87
HMGB1P27-201ENST00000431429 MAPK8IP2Q13387 824 aaPredicted RBP9.55□□□□□ -0.88
HMGB1P27-201ENST00000431429 ZBTB22O15209 634 aa9.46□□□□□ -0.9
HMGB1P27-201ENST00000431429 RNF216Q9NWF9 866 aaPredicted RBP9.45□□□□□ -0.9
HMGB1P27-201ENST00000431429 DMRT2Q9Y5R5 561 aa9.4□□□□□ -0.9
HMGB1P27-201ENST00000431429 HOXD11P31277 338 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P27-201ENST00000431429 FOXD4L1Q9NU39 408 aa9.29□□□□□ -0.92
HMGB1P27-201ENST00000431429 SLC4A2P04920 1241 aa9.18□□□□□ -0.94
HMGB1P27-201ENST00000431429 MYCNP04198 464 aaPredicted RBP8.99□□□□□ -0.97
HMGB1P27-201ENST00000431429 ATXN8OSP0DMR3 200 aa8.98□□□□□ -0.97
HMGB1P27-201ENST00000431429 U3KPZ7 1027 aaPredicted RBP8.79□□□□□ -1
HMGB1P27-201ENST00000431429 DCAF8L1A6NGE4 600 aa8.77□□□□□ -1.01
HMGB1P27-201ENST00000431429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.77□□□□□ -1.01
HMGB1P27-201ENST00000431429 ATF5Q9Y2D1 282 aaPredicted RBP8.76□□□□□ -1.01
HMGB1P27-201ENST00000431429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.71□□□□□ -1.02
HMGB1P27-201ENST00000431429 HNRNPUL2Q1KMD3 747 aaKnown RBP8.71□□□□□ -1.02
HMGB1P27-201ENST00000431429 SAMD1Q6SPF0 538 aaPredicted RBP8.71□□□□□ -1.02
HMGB1P27-201ENST00000431429 FKBP8Q14318 412 aa8.61□□□□□ -1.03
HMGB1P27-201ENST00000431429 ZNF219Q9P2Y4 722 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P27-201ENST00000431429 APLP2Q06481 763 aa8.52□□□□□ -1.05
HMGB1P27-201ENST00000431429 RNF39Q9H2S5 420 aa8.48□□□□□ -1.05
HMGB1P27-201ENST00000431429 RTN4Q9NQC3 1192 aaKnown RBP8.47□□□□□ -1.05
HMGB1P27-201ENST00000431429 AMER1Q5JTC6 1135 aaPredicted RBP8.46□□□□□ -1.06
HMGB1P27-201ENST00000431429 MKRN4PQ13434 485 aaPredicted RBP8.42□□□□□ -1.06
HMGB1P27-201ENST00000431429 SPINK5Q9NQ38 1064 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P27-201ENST00000431429 PROM2Q8N271 834 aa8.37□□□□□ -1.07
HMGB1P27-201ENST00000431429 C1QBPQ07021 282 aaKnown RBP8.36□□□□□ -1.07
HMGB1P27-201ENST00000431429 POTEDQ86YR6 584 aa8.35□□□□□ -1.07
HMGB1P27-201ENST00000431429 SPDYE4A6NLX3 237 aa8.3□□□□□ -1.08
HMGB1P27-201ENST00000431429 TRHP20396 242 aaPredicted RBP8.3□□□□□ -1.08
HMGB1P27-201ENST00000431429 POLA2Q14181 598 aa8.3□□□□□ -1.08
HMGB1P27-201ENST00000431429 CAPN15O75808 1086 aa8.26□□□□□ -1.09
HMGB1P27-201ENST00000431429 FBLN2P98095 1184 aa8.26□□□□□ -1.09
HMGB1P27-201ENST00000431429 FBXO3Q9UK99 471 aa8.21□□□□□ -1.1
HMGB1P27-201ENST00000431429 ZBTB12Q9Y330 459 aaPredicted RBP8.2□□□□□ -1.1
HMGB1P27-201ENST00000431429 DSG3P32926 999 aa8.17□□□□□ -1.1
HMGB1P27-201ENST00000431429 SLC24A1O60721 1099 aa8.16□□□□□ -1.1
HMGB1P27-201ENST00000431429 ABCB7O75027 752 aa8.16□□□□□ -1.1
HMGB1P27-201ENST00000431429 VASPP50552 380 aaPredicted RBP8.13□□□□□ -1.11
HMGB1P27-201ENST00000431429 IFNLR1Q8IU57 520 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P27-201ENST00000431429 SSUH2Q9Y2M2 353 aa8.07□□□□□ -1.12
HMGB1P27-201ENST00000431429 SPDYE2BA6NHP3 402 aa8.04□□□□□ -1.12
HMGB1P27-201ENST00000431429 SPDYE6P0CI01 402 aa8.04□□□□□ -1.12
HMGB1P27-201ENST00000431429 SPDYE2Q495Y8 402 aa8.04□□□□□ -1.12
HMGB1P27-201ENST00000431429 OSCARQ8IYS5 282 aa8.01□□□□□ -1.13
HMGB1P27-201ENST00000431429 ZNF692Q9BU19 519 aaPredicted RBP7.99□□□□□ -1.13
HMGB1P27-201ENST00000431429 PKD2Q13563 968 aa7.96□□□□□ -1.14
HMGB1P27-201ENST00000431429 STAG3Q9UJ98 1225 aa7.94□□□□□ -1.14
HMGB1P27-201ENST00000431429 PABPN1Q86U42 306 aaKnown RBP eCLIP7.91□□□□□ -1.14
HMGB1P27-201ENST00000431429 CACNB1Q02641 598 aaPredicted RBP7.88□□□□□ -1.15
HMGB1P27-201ENST00000431429 SPOCK2Q92563 424 aa7.87□□□□□ -1.15
HMGB1P27-201ENST00000431429 PLCB2Q00722 1185 aa7.83□□□□□ -1.16
HMGB1P27-201ENST00000431429 KLHL34Q8N239 644 aa7.79□□□□□ -1.16
HMGB1P27-201ENST00000431429 PLCD3Q8N3E9 789 aa7.79□□□□□ -1.16
HMGB1P27-201ENST00000431429 MIER1Q8N108 512 aa7.77□□□□□ -1.17
HMGB1P27-201ENST00000431429 ECM2O94769 699 aaPredicted RBP7.74□□□□□ -1.17
HMGB1P27-201ENST00000431429 AKT1S1Q96B36 256 aa7.73□□□□□ -1.17
HMGB1P27-201ENST00000431429 ZBTB47Q9UFB7 747 aaPredicted RBP7.73□□□□□ -1.17
HMGB1P27-201ENST00000431429 RGL2O15211 777 aa7.72□□□□□ -1.17
HMGB1P27-201ENST00000431429 NPM1P06748 294 aaKnown RBP eCLIP7.72□□□□□ -1.17
HMGB1P27-201ENST00000431429 RBM42Q9BTD8 480 aaKnown RBP7.71□□□□□ -1.18
HMGB1P27-201ENST00000431429 BBXQ8WY36 941 aaPredicted RBP7.69□□□□□ -1.18
HMGB1P27-201ENST00000431429 SPDYE1Q8NFV5 336 aaPredicted RBP7.68□□□□□ -1.18
HMGB1P27-201ENST00000431429 PLEKHG5O94827 1062 aa7.67□□□□□ -1.18
HMGB1P27-201ENST00000431429 DCAF8L2P0C7V8 631 aa7.67□□□□□ -1.18
HMGB1P27-201ENST00000431429 MNX1P50219 401 aaPredicted RBP7.67□□□□□ -1.18
HMGB1P27-201ENST00000431429 NUBP1P53384 320 aa7.67□□□□□ -1.18
HMGB1P27-201ENST00000431429 TRIM41Q8WV44 630 aa7.66□□□□□ -1.18
HMGB1P27-201ENST00000431429 CREBZFQ9NS37 354 aa7.65□□□□□ -1.18
HMGB1P27-201ENST00000431429 REM2Q8IYK8 340 aaPredicted RBP7.64□□□□□ -1.19
HMGB1P27-201ENST00000431429 DNAJC5Q9H3Z4 198 aa7.62□□□□□ -1.19
HMGB1P27-201ENST00000431429 HAP1P54257 671 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P27-201ENST00000431429 RNF25Q96BH1 459 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P27-201ENST00000431429 CIZ1Q9ULV3 898 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P27-201ENST00000431429 GSE1Q14687 1217 aa7.6□□□□□ -1.19
HMGB1P27-201ENST00000431429 VSIG10Q8N0Z9 540 aa7.6□□□□□ -1.19
HMGB1P27-201ENST00000431429 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.59□□□□□ -1.19
HMGB1P27-201ENST00000431429 PRR29P0C7W0 189 aa7.57□□□□□ -1.2
HMGB1P27-201ENST00000431429 HS6ST3Q8IZP7 471 aa7.57□□□□□ -1.2
HMGB1P27-201ENST00000431429 PITPNM1O00562 1244 aa7.56□□□□□ -1.2
HMGB1P27-201ENST00000431429 CHRM1P11229 460 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms