Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC8.07□□□□□ -1.12
CCDC61Q9Y6R9 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC8.07□□□□□ -1.12
CCDC61Q9Y6R9 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
CCDC61Q9Y6R9 LCOR-201ENST00000286067 4542 ntBASIC8.07□□□□□ -1.12
CCDC61Q9Y6R9 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC8.07□□□□□ -1.12
CCDC61Q9Y6R9 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
CCDC61Q9Y6R9 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AC241584.2-201ENST00000637142 2090 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AC138393.1-203ENST00000327086 343 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 SNORD116-18-201ENST00000383961 92 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 RN7SKP151-201ENST00000410230 316 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AC093106.2-201ENST00000428212 385 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 CEACAMP9-201ENST00000442990 513 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 RN7SL515P-201ENST00000463999 297 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AL355032.1-201ENST00000472981 438 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 COPS8P2-201ENST00000473228 627 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AC068522.1-201ENST00000482895 345 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 RNU6-798P-201ENST00000516912 103 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 IGHVII-62-1-201ENST00000519283 235 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 RPL23AP84-201ENST00000571193 464 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 GMFG-212ENST00000602185 423 ntTSL 3 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AC079776.5-201ENST00000641920 211 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 SRRM1P3-201ENST00000426911 2678 ntBASIC8.06□□□□□ -1.12
CCDC61Q9Y6R9 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RNU6-700P-201ENST00000391043 107 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 PRRC2CP1-201ENST00000404428 159 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 TRAPPC2P4-201ENST00000421750 331 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 CFL1P1-202ENST00000432948 411 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 ACA64.4-201ENST00000459070 127 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RPS17P5-201ENST00000498293 408 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RN7SKP96-201ENST00000516948 297 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 IMMP1LP3-201ENST00000604197 224 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 OR4G2P-202ENST00000641004 1759 ntBASIC8.05□□□□□ -1.12
CCDC61Q9Y6R9 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AL359922.2-201ENST00000581788 3017 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 WBP11P1-201ENST00000562560 1931 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 SNORD8-201ENST00000363915 110 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 Y_RNA.602-201ENST00000410535 92 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 RNA5SP107-201ENST00000411358 122 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AL663074.2-201ENST00000440621 479 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 PIGFP3-201ENST00000441918 722 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 TRAPPC2P7-201ENST00000509650 231 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 BX510359.5-201ENST00000515651 304 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AC021678.3-201ENST00000517893 476 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 IGLV2-28-201ENST00000520681 304 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AC104576.1-201ENST00000524225 88 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC8.04□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms