Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX1P28360 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX1P28360 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX1P28360 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX1P28360 TRBVB-201ENST00000477100 408 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AC025458.1-201ENST00000506046 166 ntBASIC5.64□□□□□ -1.51
MSX1P28360 Y_RNA.710-201ENST00000516975 110 ntBASIC5.64□□□□□ -1.51
MSX1P28360 RNU6-570P-201ENST00000517051 105 ntBASIC5.64□□□□□ -1.51
MSX1P28360 IGKV3D-25-201ENST00000519599 235 ntBASIC5.64□□□□□ -1.51
MSX1P28360 HMGN1P28-201ENST00000521340 364 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX1P28360 AC068446.3-201ENST00000555285 382 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AL049839.1-201ENST00000556151 657 ntBASIC5.64□□□□□ -1.51
MSX1P28360 MRPS21P8-201ENST00000569196 235 ntBASIC5.64□□□□□ -1.51
MSX1P28360 MIR3614-201ENST00000581261 86 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AC011445.2-201ENST00000599274 173 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AC130454.1-201ENST00000622948 401 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AP001784.1-201ENST00000624107 428 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AC108751.5-201ENST00000492880 1336 ntBASIC5.64□□□□□ -1.51
MSX1P28360 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 AC027575.3-201ENST00000583058 2747 ntBASIC5.64□□□□□ -1.51
MSX1P28360 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX1P28360 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
MSX1P28360 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
MSX1P28360 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX1P28360 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX1P28360 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.63□□□□□ -1.51
MSX1P28360 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX1P28360 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX1P28360 AL137003.2-201ENST00000606924 2538 ntBASIC5.63□□□□□ -1.51
MSX1P28360 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX1P28360 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 RN7SKP69-201ENST00000365390 305 ntBASIC5.63□□□□□ -1.51
MSX1P28360 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX1P28360 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 SNORA70.9-201ENST00000384370 135 ntBASIC5.63□□□□□ -1.51
MSX1P28360 MIR517A-201ENST00000385001 87 ntBASIC5.63□□□□□ -1.51
MSX1P28360 MIR548H3-201ENST00000408771 118 ntBASIC5.63□□□□□ -1.51
MSX1P28360 RN7SKP151-201ENST00000410230 316 ntBASIC5.63□□□□□ -1.51
MSX1P28360 RNA5SP156-201ENST00000410250 110 ntBASIC5.63□□□□□ -1.51
MSX1P28360 RPL21P24-201ENST00000413752 448 ntBASIC5.63□□□□□ -1.51
MSX1P28360 AC130360.1-201ENST00000425489 1117 ntBASIC5.63□□□□□ -1.51
MSX1P28360 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX1P28360 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX1P28360 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX1P28360 AL031274.1-201ENST00000450334 232 ntBASIC5.63□□□□□ -1.51
MSX1P28360 RNU7-187P-201ENST00000458985 68 ntBASIC5.63□□□□□ -1.51
MSX1P28360 AC004453.1-201ENST00000487895 408 ntBASIC5.63□□□□□ -1.51
MSX1P28360 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX1P28360 IGKV2-19-201ENST00000518132 283 ntBASIC5.63□□□□□ -1.51
MSX1P28360 AC130365.2-201ENST00000525882 1201 ntBASIC5.63□□□□□ -1.51
MSX1P28360 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX1P28360 AC079905.1-201ENST00000549280 475 ntBASIC5.63□□□□□ -1.51
MSX1P28360 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
MSX1P28360 AC090517.1-201ENST00000569307 266 ntBASIC5.63□□□□□ -1.51
MSX1P28360 AL451044.1-201ENST00000604867 238 ntBASIC5.63□□□□□ -1.51
MSX1P28360 AC008555.7-201ENST00000605008 583 ntBASIC5.63□□□□□ -1.51
MSX1P28360 AL158032.1-201ENST00000605401 106 ntBASIC5.63□□□□□ -1.51
MSX1P28360 AC004792.1-201ENST00000614523 137 ntBASIC5.63□□□□□ -1.51
MSX1P28360 SNHG22-203ENST00000617833 660 ntBASIC5.63□□□□□ -1.51
MSX1P28360 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX1P28360 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
MSX1P28360 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
MSX1P28360 AL122126.1-201ENST00000546905 1318 ntBASIC5.63□□□□□ -1.51
MSX1P28360 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 AC079753.1-201ENST00000623243 3868 ntBASIC5.63□□□□□ -1.51
MSX1P28360 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX1P28360 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX1P28360 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
MSX1P28360 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
MSX1P28360 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX1P28360 AC016745.2-201ENST00000608834 3443 ntBASIC5.62□□□□□ -1.51
MSX1P28360 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX1P28360 SNORA51.1-201ENST00000363243 140 ntBASIC5.62□□□□□ -1.51
MSX1P28360 Y_RNA.151-201ENST00000363566 112 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RN7SKP162-201ENST00000363605 345 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RNU4-50P-201ENST00000364361 141 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RNA5SP510-201ENST00000364697 99 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RNU6-338P-201ENST00000383888 105 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RNU6-398P-201ENST00000384143 109 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RNU6-662P-201ENST00000384253 104 ntBASIC5.62□□□□□ -1.51
MSX1P28360 PPIAP9-201ENST00000403866 498 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RPS4XP7-201ENST00000406274 780 ntBASIC5.62□□□□□ -1.51
MSX1P28360 RNU2-71P-201ENST00000411395 189 ntBASIC5.62□□□□□ -1.51
MSX1P28360 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX1P28360 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms