Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL6A3P12111 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
COL6A3P12111 USP9YP20-201ENST00000419224 558 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 ARL2BPP6-201ENST00000512757 439 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 RNA5SP220-201ENST00000516298 104 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
COL6A3P12111 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC2.45□□□□□ -2.02
COL6A3P12111 AC067747.1-201ENST00000608026 250 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC2.45□□□□□ -2.02
COL6A3P12111 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
COL6A3P12111 RNU1-91P-201ENST00000364746 163 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 AL591416.1-201ENST00000404015 867 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 MTND6P18-201ENST00000439477 513 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC2.45□□□□□ -2.02
COL6A3P12111 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC2.45□□□□□ -2.02
COL6A3P12111 AC010546.1-201ENST00000569391 485 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC2.45□□□□□ -2.02
COL6A3P12111 MIR4452-201ENST00000583004 71 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 AC090115.4-201ENST00000609970 188 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL6A3P12111 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
COL6A3P12111 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
COL6A3P12111 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL6A3P12111 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL6A3P12111 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 AC083843.2-201ENST00000568248 6253 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.44□□□□□ -2.02
COL6A3P12111 SNORD56.3-201ENST00000363507 71 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
COL6A3P12111 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
COL6A3P12111 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.44□□□□□ -2.02
COL6A3P12111 AL365396.1-201ENST00000430854 671 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 ALDH7A1P3-201ENST00000492517 345 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC2.44□□□□□ -2.02
COL6A3P12111 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.44□□□□□ -2.02
COL6A3P12111 MIR6515-201ENST00000619843 57 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
COL6A3P12111 U3.6-201ENST00000363622 211 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.44□□□□□ -2.02
COL6A3P12111 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
COL6A3P12111 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC2.44□□□□□ -2.02
COL6A3P12111 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.44□□□□□ -2.02
COL6A3P12111 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC2.44□□□□□ -2.02
COL6A3P12111 CR589904.2-201ENST00000612533 440 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 AL160394.1-201ENST00000624765 724 ntBASIC2.44□□□□□ -2.02
COL6A3P12111 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC2.44□□□□□ -2.02
COL6A3P12111 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL6A3P12111 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC2.44□□□□□ -2.02
COL6A3P12111 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.43□□□□□ -2.02
COL6A3P12111 MIR30E-201ENST00000362104 92 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 RNA5SP190-201ENST00000365222 118 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 RNA5SP274-201ENST00000410484 108 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.43□□□□□ -2.02
COL6A3P12111 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.43□□□□□ -2.02
COL6A3P12111 AC233279.1-201ENST00000455300 423 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 OR5H3P-201ENST00000502817 919 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.43□□□□□ -2.02
COL6A3P12111 ACTR6P1-201ENST00000514311 1104 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC2.43□□□□□ -2.02
COL6A3P12111 AC108479.2-201ENST00000617314 601 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.43□□□□□ -2.02
COL6A3P12111 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL6A3P12111 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC2.43□□□□□ -2.02
COL6A3P12111 SDCBPP3-201ENST00000419629 891 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC2.43□□□□□ -2.02
COL6A3P12111 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC2.43□□□□□ -2.02
COL6A3P12111 MIR4303-201ENST00000581299 66 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.43□□□□□ -2.02
COL6A3P12111 AC008121.2-201ENST00000614647 523 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 AC010872.1-201ENST00000624225 675 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 AC025048.6-202ENST00000627667 438 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL6A3P12111 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL6A3P12111 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
COL6A3P12111 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL6A3P12111 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC2.43□□□□□ -2.02
COL6A3P12111 RAD1P1-201ENST00000231383 813 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 AC104389.3-201ENST00000445629 235 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 AC068657.1-201ENST00000520807 306 ntBASIC2.43□□□□□ -2.02
COL6A3P12111 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
COL6A3P12111 Y_RNA.191-201ENST00000363972 113 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 U3.11-201ENST00000364476 212 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A3P12111 AC013410.1-201ENST00000436223 1232 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC2.42□□□□□ -2.02
COL6A3P12111 HMGN1P18-201ENST00000457642 277 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 AC092798.1-201ENST00000458542 409 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.42□□□□□ -2.02
COL6A3P12111 OR8L1P-201ENST00000534005 955 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
COL6A3P12111 AC097714.1-201ENST00000511272 1647 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC2.42□□□□□ -2.02
COL6A3P12111 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A3P12111 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A3P12111 RNA5SP456-201ENST00000364002 114 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL6A3P12111 U8.10-201ENST00000384260 133 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 SNORA40.18-201ENST00000391200 128 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 RNU2-17P-201ENST00000410290 190 ntBASIC2.42□□□□□ -2.02
COL6A3P12111 RPL32P35-201ENST00000415214 394 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms