Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 Y_RNA.122-201ENST00000363331 96 ntBASIC1.53□□□□□ -2.16
HSPG2P98160 HMGB3P8-201ENST00000449709 577 ntBASIC1.53□□□□□ -2.16
HSPG2P98160 ACTR6P1-201ENST00000514311 1104 ntBASIC1.53□□□□□ -2.16
HSPG2P98160 RN7SKP24-201ENST00000515888 284 ntBASIC1.53□□□□□ -2.16
HSPG2P98160 IGKV2D-23-201ENST00000518179 286 ntBASIC1.53□□□□□ -2.16
HSPG2P98160 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC1.53□□□□□ -2.16
HSPG2P98160 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC1.53□□□□□ -2.16
HSPG2P98160 MIR6873-201ENST00000622788 63 ntBASIC1.53□□□□□ -2.16
HSPG2P98160 Z82209.1-201ENST00000422141 2135 ntBASIC1.53□□□□□ -2.17
HSPG2P98160 RFX3-203ENST00000381984 364 ntTSL 3 BASIC1.52□□□□□ -2.17
HSPG2P98160 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.52□□□□□ -2.17
HSPG2P98160 NDUFA5P4-201ENST00000436704 385 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AC003982.1-202ENST00000469928 248 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AC105918.1-201ENST00000474399 838 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 RNU4ATAC3P-201ENST00000516699 126 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC1.52□□□□□ -2.17
HSPG2P98160 AL162233.1-201ENST00000620014 944 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AC138915.3-201ENST00000562908 1389 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 RNU2-2P-201ENST00000410396 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AL451074.3-201ENST00000437709 472 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AL035551.1-201ENST00000446931 348 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AP000893.1-201ENST00000474462 794 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AP001521.1-201ENST00000609150 300 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.15-201ENST00000611544 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.16-201ENST00000613119 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.12-201ENST00000613778 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.20-201ENST00000613956 192 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.9-201ENST00000615427 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.11-201ENST00000616345 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.2-201ENST00000616535 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.3-201ENST00000617785 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.19-201ENST00000618602 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 RNU2-1-201ENST00000618664 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.6-201ENST00000619225 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.5-201ENST00000619465 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 U2.10-201ENST00000620268 191 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 AC027514.1-201ENST00000588561 1603 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
HSPG2P98160 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 RNU1-87P-201ENST00000363727 170 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 MIR221-201ENST00000385135 110 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 RN7SKP247-201ENST00000411094 308 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC1.52□□□□□ -2.17
HSPG2P98160 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.52□□□□□ -2.17
HSPG2P98160 AC096725.1-201ENST00000514266 313 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 AC008083.2-201ENST00000546707 476 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC1.52□□□□□ -2.17
HSPG2P98160 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC1.52□□□□□ -2.17
HSPG2P98160 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC1.52□□□□□ -2.17
HSPG2P98160 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC1.52□□□□□ -2.17
HSPG2P98160 SNORD62.1-201ENST00000362541 86 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC1.52□□□□□ -2.17
HSPG2P98160 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC1.52□□□□□ -2.17
HSPG2P98160 AC107222.1-201ENST00000510899 637 ntBASIC1.52□□□□□ -2.17
HSPG2P98160 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HSPG2P98160 AC011460.1-201ENST00000636268 1834 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 MTND4P10-201ENST00000446199 1363 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 RNU1-35P-201ENST00000362782 153 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.51□□□□□ -2.17
HSPG2P98160 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC1.51□□□□□ -2.17
HSPG2P98160 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC1.51□□□□□ -2.17
HSPG2P98160 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.51□□□□□ -2.17
HSPG2P98160 CRYM-AS1-204ENST00000637983 556 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
HSPG2P98160 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
HSPG2P98160 RNA5SP456-201ENST00000364002 114 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.51□□□□□ -2.17
HSPG2P98160 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC1.51□□□□□ -2.17
HSPG2P98160 MTCO3P21-201ENST00000430791 643 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.51□□□□□ -2.17
HSPG2P98160 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC1.51□□□□□ -2.17
HSPG2P98160 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.51□□□□□ -2.17
HSPG2P98160 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC1.51□□□□□ -2.17
HSPG2P98160 AC128687.1-201ENST00000605304 619 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 WARS-244ENST00000627608 123 ntTSL 5 BASIC1.51□□□□□ -2.17
HSPG2P98160 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HSPG2P98160 FAR1P1-201ENST00000427163 934 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 AP004217.1-201ENST00000480579 346 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
HSPG2P98160 OR10D4P-201ENST00000525892 951 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 AC110741.2-201ENST00000605278 268 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 AC010378.1-201ENST00000619270 362 ntBASIC1.51□□□□□ -2.17
HSPG2P98160 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms