RNA–Protein interactions for RNA: ENST00000396464.7

GABPB1-204, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,401 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-204ENST00000396464 AEBP2Q6ZN18 517 aaPredicted RBP23.03■■□□□ 1.28
GABPB1-204ENST00000396464 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
GABPB1-204ENST00000396464 SENP3Q9H4L4 574 aaPredicted RBP19.77■□□□□ 0.76
GABPB1-204ENST00000396464 PHF23Q9BUL5 403 aaPredicted RBP19.49■□□□□ 0.71
GABPB1-204ENST00000396464 FOXD1Q16676 465 aa18.33■□□□□ 0.53
GABPB1-204ENST00000396464 PLPPR3Q6T4P5 718 aa17.69■□□□□ 0.42
GABPB1-204ENST00000396464 PIAS4Q8N2W9 510 aaPredicted RBP17.24■□□□□ 0.35
GABPB1-204ENST00000396464 MSH5O43196 834 aa17.23■□□□□ 0.35
GABPB1-204ENST00000396464 ADRA2BP18089 450 aa17.17■□□□□ 0.34
GABPB1-204ENST00000396464 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
GABPB1-204ENST00000396464 POTEDQ86YR6 584 aa16.62■□□□□ 0.25
GABPB1-204ENST00000396464 SCAF1Q9H7N4 1312 aaKnown RBP15.84■□□□□ 0.13
GABPB1-204ENST00000396464 MAPK8IP2Q13387 824 aaPredicted RBP15.73■□□□□ 0.11
GABPB1-204ENST00000396464 DMRT2Q9Y5R5 561 aa15.64■□□□□ 0.09
GABPB1-204ENST00000396464 PPP4R3CPQ6ZMV5 832 aa15.49■□□□□ 0.07
GABPB1-204ENST00000396464 CNKSR2Q8WXI2 1034 aa15.19■□□□□ 0.02
GABPB1-204ENST00000396464 DCAF8L1A6NGE4 600 aa15.15■□□□□ 0.02
GABPB1-204ENST00000396464 HOXD11P31277 338 aaPredicted RBP15.07■□□□□ 0
GABPB1-204ENST00000396464 RNF216Q9NWF9 866 aaPredicted RBP15.02■□□□□ -0
GABPB1-204ENST00000396464 NCBP3Q53F19 620 aaKnown RBP15□□□□□ -0.01
GABPB1-204ENST00000396464 CACNB1Q02641 598 aaPredicted RBP14.78□□□□□ -0.04
GABPB1-204ENST00000396464 NPM3O75607 178 aaKnown RBP14.66□□□□□ -0.06
GABPB1-204ENST00000396464 RNF39Q9H2S5 420 aa14.64□□□□□ -0.07
GABPB1-204ENST00000396464 DNAJC5BQ9UF47 199 aa14.54□□□□□ -0.08
GABPB1-204ENST00000396464 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.49□□□□□ -0.09
GABPB1-204ENST00000396464 C1QBPQ07021 282 aaKnown RBP14.49□□□□□ -0.09
GABPB1-204ENST00000396464 KCNA4P22459 653 aa14.45□□□□□ -0.1
GABPB1-204ENST00000396464 U3KPZ7 1027 aaPredicted RBP14.07□□□□□ -0.16
GABPB1-204ENST00000396464 CAPN15O75808 1086 aa13.94□□□□□ -0.18
GABPB1-204ENST00000396464 SLC4A2P04920 1241 aa13.94□□□□□ -0.18
GABPB1-204ENST00000396464 APLP2Q06481 763 aa13.87□□□□□ -0.19
GABPB1-204ENST00000396464 SPINK5Q9NQ38 1064 aaPredicted RBP13.86□□□□□ -0.19
GABPB1-204ENST00000396464 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.84□□□□□ -0.19
GABPB1-204ENST00000396464 HNRNPUL2Q1KMD3 747 aaKnown RBP13.84□□□□□ -0.19
GABPB1-204ENST00000396464 DSG3P32926 999 aa13.73□□□□□ -0.21
GABPB1-204ENST00000396464 SAMD1Q6SPF0 538 aaPredicted RBP13.73□□□□□ -0.21
GABPB1-204ENST00000396464 TRHP20396 242 aaPredicted RBP13.73□□□□□ -0.21
GABPB1-204ENST00000396464 SLC4A1APQ9BWU0 796 aaKnown RBP13.73□□□□□ -0.21
GABPB1-204ENST00000396464 ZNF219Q9P2Y4 722 aaPredicted RBP13.7□□□□□ -0.22
GABPB1-204ENST00000396464 MYCNP04198 464 aaPredicted RBP13.63□□□□□ -0.23
GABPB1-204ENST00000396464 ABCB7O75027 752 aa13.58□□□□□ -0.24
GABPB1-204ENST00000396464 FOXD4L1Q9NU39 408 aa13.51□□□□□ -0.25
GABPB1-204ENST00000396464 POLA2Q14181 598 aa13.34□□□□□ -0.27
GABPB1-204ENST00000396464 ZBTB22O15209 634 aa13.22□□□□□ -0.29
GABPB1-204ENST00000396464 RBM42Q9BTD8 480 aaKnown RBP13.22□□□□□ -0.29
GABPB1-204ENST00000396464 ATF5Q9Y2D1 282 aaPredicted RBP13.21□□□□□ -0.3
GABPB1-204ENST00000396464 ZBTB12Q9Y330 459 aaPredicted RBP13.13□□□□□ -0.31
GABPB1-204ENST00000396464 ATXN8OSP0DMR3 200 aa13.08□□□□□ -0.32
GABPB1-204ENST00000396464 POTEHQ6S545 545 aa13.08□□□□□ -0.32
GABPB1-204ENST00000396464 OSCARQ8IYS5 282 aa12.89□□□□□ -0.35
GABPB1-204ENST00000396464 AKT1S1Q96B36 256 aa12.88□□□□□ -0.35
GABPB1-204ENST00000396464 FBLN2P98095 1184 aa12.86□□□□□ -0.35
GABPB1-204ENST00000396464 CHRDL2Q6WN34 429 aa12.84□□□□□ -0.35
GABPB1-204ENST00000396464 REM2Q8IYK8 340 aaPredicted RBP12.73□□□□□ -0.37
GABPB1-204ENST00000396464 CSRNP3Q8WYN3 585 aa12.71□□□□□ -0.37
GABPB1-204ENST00000396464 EHMT2Q96KQ7 1210 aa12.71□□□□□ -0.38
GABPB1-204ENST00000396464 SPDYE2BA6NHP3 402 aa12.68□□□□□ -0.38
GABPB1-204ENST00000396464 SPDYE6P0CI01 402 aa12.68□□□□□ -0.38
GABPB1-204ENST00000396464 SPDYE2Q495Y8 402 aa12.68□□□□□ -0.38
GABPB1-204ENST00000396464 MKRN4PQ13434 485 aaPredicted RBP12.6□□□□□ -0.39
GABPB1-204ENST00000396464 PITPNM1O00562 1244 aa12.58□□□□□ -0.4
GABPB1-204ENST00000396464 ZNF692Q9BU19 519 aaPredicted RBP12.57□□□□□ -0.4
GABPB1-204ENST00000396464 PIP4P2Q8N4L2 257 aa12.52□□□□□ -0.41
GABPB1-204ENST00000396464 CLEC11AQ9Y240 323 aa12.48□□□□□ -0.41
GABPB1-204ENST00000396464 SPDYE1Q8NFV5 336 aaPredicted RBP12.47□□□□□ -0.41
GABPB1-204ENST00000396464 SSUH2Q9Y2M2 353 aa12.45□□□□□ -0.42
GABPB1-204ENST00000396464 FXR2P51116 673 aaKnown RBP eCLIP12.44□□□□□ -0.42
GABPB1-204ENST00000396464 HAX1O00165 279 aa12.37□□□□□ -0.43
GABPB1-204ENST00000396464 PABPN1Q86U42 306 aaKnown RBP eCLIP12.37□□□□□ -0.43
GABPB1-204ENST00000396464 PRKAR2AP13861 404 aaKnown RBP12.3□□□□□ -0.44
GABPB1-204ENST00000396464 SP7Q8TDD2 431 aaPredicted RBP12.29□□□□□ -0.44
GABPB1-204ENST00000396464 PRR29P0C7W0 189 aa12.27□□□□□ -0.45
GABPB1-204ENST00000396464 CHADLQ6NUI6 762 aa12.16□□□□□ -0.46
GABPB1-204ENST00000396464 SPDYE4A6NLX3 237 aa12.15□□□□□ -0.46
GABPB1-204ENST00000396464 STAG3Q9UJ98 1225 aa12.1□□□□□ -0.47
GABPB1-204ENST00000396464 EVX2Q03828 476 aa12.06□□□□□ -0.48
GABPB1-204ENST00000396464 C19orf67A6NJJ6 358 aa12.03□□□□□ -0.48
GABPB1-204ENST00000396464 FARP1Q9Y4F1 1045 aaPredicted RBP12□□□□□ -0.49
GABPB1-204ENST00000396464 CD44P16070 742 aaKnown RBP11.93□□□□□ -0.5
GABPB1-204ENST00000396464 CREBZFQ9NS37 354 aa11.88□□□□□ -0.51
GABPB1-204ENST00000396464 GABBR2O75899 941 aa11.86□□□□□ -0.51
GABPB1-204ENST00000396464 PAK3O75914 559 aaPredicted RBP11.79□□□□□ -0.52
GABPB1-204ENST00000396464 NPM1P06748 294 aaKnown RBP eCLIP11.79□□□□□ -0.52
GABPB1-204ENST00000396464 ZRANB1Q9UGI0 708 aa11.78□□□□□ -0.52
GABPB1-204ENST00000396464 CLCN6P51797 869 aa11.77□□□□□ -0.52
GABPB1-204ENST00000396464 PROM2Q8N271 834 aa11.74□□□□□ -0.53
GABPB1-204ENST00000396464 PLEKHG5O94827 1062 aa11.71□□□□□ -0.53
GABPB1-204ENST00000396464 ZNF579Q8NAF0 562 aaKnown RBP11.7□□□□□ -0.54
GABPB1-204ENST00000396464 DCBLD2Q96PD2 775 aa11.67□□□□□ -0.54
GABPB1-204ENST00000396464 MIER1Q8N108 512 aa11.64□□□□□ -0.55
GABPB1-204ENST00000396464 MNX1P50219 401 aaPredicted RBP11.63□□□□□ -0.55
GABPB1-204ENST00000396464 FKBP8Q14318 412 aa11.62□□□□□ -0.55
GABPB1-204ENST00000396464 PHF12Q96QT6 1004 aa11.59□□□□□ -0.55
GABPB1-204ENST00000396464 PLCD3Q8N3E9 789 aa11.58□□□□□ -0.56
GABPB1-204ENST00000396464 LHX8Q68G74 356 aa11.55□□□□□ -0.56
GABPB1-204ENST00000396464 TSPYL2Q9H2G4 693 aaPredicted RBP11.55□□□□□ -0.56
GABPB1-204ENST00000396464 GALR2O43603 387 aaPredicted RBP11.54□□□□□ -0.56
GABPB1-204ENST00000396464 POTEIP0CG38 1075 aa11.53□□□□□ -0.56
GABPB1-204ENST00000396464 ZBTB47Q9UFB7 747 aaPredicted RBP11.5□□□□□ -0.57
GABPB1-204ENST00000396464 FBXO3Q9UK99 471 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms