Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RN7SKP281-201ENST00000410472 352 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 AL031736.2-201ENST00000426573 787 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 RN7SL385P-201ENST00000468873 276 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.54□□□□□ -1.36
COL9A1P20849 LRRC37A5P-203ENST00000580181 585 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 MIR4505-201ENST00000582238 73 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 AL020997.2-201ENST00000602607 184 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 AC037487.3-201ENST00000606668 112 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC6.54□□□□□ -1.36
COL9A1P20849 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.54□□□□□ -1.36
COL9A1P20849 AC016251.2-201ENST00000623393 3089 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC6.54□□□□□ -1.36
COL9A1P20849 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC6.54□□□□□ -1.36
COL9A1P20849 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC6.54□□□□□ -1.36
COL9A1P20849 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.53□□□□□ -1.36
COL9A1P20849 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
COL9A1P20849 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 RBBP8P1-201ENST00000449447 1844 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 AC011592.1-201ENST00000624647 3634 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC6.53□□□□□ -1.36
COL9A1P20849 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC6.53□□□□□ -1.36
COL9A1P20849 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 Y_RNA.504-201ENST00000384481 104 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 Y_RNA.568-201ENST00000384742 113 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 AP003170.5-201ENST00000397185 335 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 AL079342.1-201ENST00000401460 267 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL9A1P20849 AL139148.1-201ENST00000427122 680 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 ELOCP18-201ENST00000434209 337 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 AC092573.2-201ENST00000434546 243 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 RPS11P7-201ENST00000442125 465 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 RPL7AP6-201ENST00000477943 801 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 RN7SL193P-201ENST00000491708 276 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.53□□□□□ -1.36
COL9A1P20849 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 AC074133.1-201ENST00000515696 183 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 RNU6-919P-201ENST00000516731 104 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.53□□□□□ -1.36
COL9A1P20849 FAM60BP-201ENST00000578364 658 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.53□□□□□ -1.36
COL9A1P20849 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC6.53□□□□□ -1.36
COL9A1P20849 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC6.53□□□□□ -1.36
COL9A1P20849 AC025588.3-201ENST00000604182 274 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 SNORD39.4-201ENST00000620099 78 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.53□□□□□ -1.36
COL9A1P20849 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.53□□□□□ -1.36
COL9A1P20849 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 AC097063.1-201ENST00000426714 1797 ntBASIC6.53□□□□□ -1.36
COL9A1P20849 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.53□□□□□ -1.36
COL9A1P20849 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
COL9A1P20849 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL9A1P20849 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.36
COL9A1P20849 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
COL9A1P20849 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
COL9A1P20849 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.36
COL9A1P20849 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC6.52□□□□□ -1.36
COL9A1P20849 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.52□□□□□ -1.37
COL9A1P20849 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC6.52□□□□□ -1.37
COL9A1P20849 AC018628.1-201ENST00000624147 3819 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL9A1P20849 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.52□□□□□ -1.37
COL9A1P20849 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
COL9A1P20849 RNU6-102P-201ENST00000384485 104 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 HSPE1P8-201ENST00000406997 288 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 Y_RNA.590-201ENST00000410140 107 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 RNU2-22P-201ENST00000411266 212 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC6.52□□□□□ -1.37
COL9A1P20849 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL9A1P20849 AL162725.1-201ENST00000435405 301 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 CYCSP43-201ENST00000438233 310 ntBASIC6.52□□□□□ -1.37
COL9A1P20849 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms