Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.14□□□□□ -2.07
FOXA3P55318 RPL7L1P13-201ENST00000511702 739 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AC016065.2-201ENST00000514530 444 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AC087373.1-201ENST00000524920 491 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA3P55318 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA3P55318 AL121594.4-201ENST00000556211 1196 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA3P55318 AC005242.1-201ENST00000585658 438 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA3P55318 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.14□□□□□ -2.07
FOXA3P55318 AP004372.1-201ENST00000604842 844 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AL133507.1-201ENST00000605269 557 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AC008083.4-201ENST00000615076 444 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AL355365.1-201ENST00000616480 294 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA3P55318 AL161637.1-201ENST00000622380 412 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA3P55318 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA3P55318 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA3P55318 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA3P55318 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
FOXA3P55318 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
FOXA3P55318 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA3P55318 MIR26A1-201ENST00000362205 77 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 RNA5SP50-201ENST00000363731 107 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA3P55318 CYCSP19-201ENST00000411715 316 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AL606490.7-201ENST00000433136 191 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA3P55318 H2AFZP6-201ENST00000444403 394 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA3P55318 HMGB1P48-201ENST00000446155 598 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 RN7SL863P-201ENST00000462370 296 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC026412.2-201ENST00000512270 1075 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC067904.2-201ENST00000517322 1283 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 PAICSP4-201ENST00000517543 1253 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.13□□□□□ -2.07
FOXA3P55318 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA3P55318 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA3P55318 CIR1P1-201ENST00000524055 1133 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 HPRT1P3-201ENST00000539521 576 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA3P55318 NBEAP1-201ENST00000554452 979 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA3P55318 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA3P55318 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA3P55318 MIR3160-1-201ENST00000577972 85 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC060766.3-201ENST00000591442 263 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AL356575.1-201ENST00000603008 283 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC007566.2-201ENST00000603642 413 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC012557.1-201ENST00000607115 611 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA3P55318 AC069200.1-201ENST00000609511 323 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AC024941.1-201ENST00000612250 334 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 AL354950.1-201ENST00000614150 568 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA3P55318 AC010297.1-201ENST00000623948 149 ntBASIC2.13□□□□□ -2.07
FOXA3P55318 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
FOXA3P55318 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA3P55318 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.12□□□□□ -2.07
FOXA3P55318 NSRP1P1-201ENST00000444067 1693 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 NACA3P-201ENST00000359690 648 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 SNORA25.6-201ENST00000364121 118 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 RNU1-64P-201ENST00000365443 163 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA3P55318 TAF9BP1-201ENST00000396646 746 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AL512633.1-201ENST00000399931 655 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA3P55318 RNU6ATAC-201ENST00000408749 126 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 RPS29P4-201ENST00000414733 161 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AC016769.2-201ENST00000414815 475 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.12□□□□□ -2.07
FOXA3P55318 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.12□□□□□ -2.07
FOXA3P55318 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA3P55318 HMGN2P30-201ENST00000423237 256 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.12□□□□□ -2.07
FOXA3P55318 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA3P55318 UBE2V1P6-201ENST00000430840 422 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 PTP4A1P3-201ENST00000433661 420 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA3P55318 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC2.12□□□□□ -2.07
FOXA3P55318 RPL23AP74-201ENST00000437246 471 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AL513043.1-201ENST00000439124 535 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.12□□□□□ -2.07
FOXA3P55318 Z75741.1-201ENST00000446793 314 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC2.12□□□□□ -2.07
FOXA3P55318 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA3P55318 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA3P55318 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA3P55318 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.12□□□□□ -2.07
FOXA3P55318 RPL7P15-201ENST00000461190 712 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AC034236.1-201ENST00000469891 373 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AL133372.1-201ENST00000493565 745 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AC105914.1-201ENST00000511798 226 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.12□□□□□ -2.07
FOXA3P55318 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA3P55318 SCARNA13-201ENST00000516672 275 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA3P55318 OR8I1P-201ENST00000529291 931 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms