Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CUX1P39880 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CUX1P39880 RPL9P7-201ENST00000330965 580 ntBASIC4.14□□□□□ -1.75
CUX1P39880 USP9YP20-201ENST00000419224 558 ntBASIC4.14□□□□□ -1.75
CUX1P39880 OR4G11P-201ENST00000492842 939 ntBASIC4.14□□□□□ -1.75
CUX1P39880 AC106872.2-201ENST00000494303 480 ntBASIC4.14□□□□□ -1.75
CUX1P39880 AC021146.5-201ENST00000503544 545 ntBASIC4.14□□□□□ -1.75
CUX1P39880 RNU6ATAC39P-201ENST00000516309 149 ntBASIC4.14□□□□□ -1.75
CUX1P39880 RN7SKP31-201ENST00000516354 278 ntBASIC4.14□□□□□ -1.75
CUX1P39880 AP000867.2-201ENST00000532468 320 ntBASIC4.14□□□□□ -1.75
CUX1P39880 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.14□□□□□ -1.75
CUX1P39880 CKS1BP1-201ENST00000555221 240 ntBASIC4.14□□□□□ -1.75
CUX1P39880 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CUX1P39880 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CUX1P39880 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CUX1P39880 RNU6ATAC40P-201ENST00000408580 137 ntBASIC4.13□□□□□ -1.75
CUX1P39880 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.13□□□□□ -1.75
CUX1P39880 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.13□□□□□ -1.75
CUX1P39880 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.13□□□□□ -1.75
CUX1P39880 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC4.13□□□□□ -1.75
CUX1P39880 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.13□□□□□ -1.75
CUX1P39880 AC068313.1-201ENST00000604028 1008 ntBASIC4.13□□□□□ -1.75
CUX1P39880 AC046143.2-201ENST00000609789 160 ntBASIC4.13□□□□□ -1.75
CUX1P39880 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.13□□□□□ -1.75
CUX1P39880 AC099063.3-201ENST00000642066 185 ntBASIC4.13□□□□□ -1.75
CUX1P39880 AL021368.2-201ENST00000606125 5352 ntBASIC4.13□□□□□ -1.75
CUX1P39880 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CUX1P39880 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CUX1P39880 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CUX1P39880 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CUX1P39880 TRGV5P-201ENST00000419915 354 ntBASIC4.12□□□□□ -1.75
CUX1P39880 AL353705.4-201ENST00000449661 238 ntBASIC4.12□□□□□ -1.75
CUX1P39880 MTND4P2-201ENST00000507767 1203 ntBASIC4.12□□□□□ -1.75
CUX1P39880 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CUX1P39880 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.12□□□□□ -1.75
CUX1P39880 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.12□□□□□ -1.75
CUX1P39880 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.12□□□□□ -1.75
CUX1P39880 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC4.12□□□□□ -1.75
CUX1P39880 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CUX1P39880 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.12□□□□□ -1.75
CUX1P39880 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CUX1P39880 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CUX1P39880 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.11□□□□□ -1.75
CUX1P39880 MTND5P19-201ENST00000424872 1794 ntBASIC4.11□□□□□ -1.75
CUX1P39880 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CUX1P39880 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CUX1P39880 PTP4A1P5-201ENST00000420305 455 ntBASIC4.11□□□□□ -1.75
CUX1P39880 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.11□□□□□ -1.75
CUX1P39880 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4.11□□□□□ -1.75
CUX1P39880 RPL30P9-201ENST00000465586 330 ntBASIC4.11□□□□□ -1.75
CUX1P39880 RPL23AP45-201ENST00000476406 468 ntBASIC4.11□□□□□ -1.75
CUX1P39880 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.11□□□□□ -1.75
CUX1P39880 RNU6-548P-201ENST00000517083 115 ntBASIC4.11□□□□□ -1.75
CUX1P39880 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CUX1P39880 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.11□□□□□ -1.75
CUX1P39880 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC4.11□□□□□ -1.75
CUX1P39880 AC055876.1-202ENST00000567053 138 ntBASIC4.11□□□□□ -1.75
CUX1P39880 RPL23AP84-201ENST00000571193 464 ntBASIC4.11□□□□□ -1.75
CUX1P39880 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CUX1P39880 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CUX1P39880 Z73965.1-201ENST00000623412 2297 ntBASIC4.11□□□□□ -1.75
CUX1P39880 RPL21P132-201ENST00000331267 462 ntBASIC4.11□□□□□ -1.75
CUX1P39880 Y_RNA.4-201ENST00000362333 112 ntBASIC4.11□□□□□ -1.75
CUX1P39880 RNU1-73P-201ENST00000383971 164 ntBASIC4.11□□□□□ -1.75
CUX1P39880 RNU6-76P-201ENST00000384060 104 ntBASIC4.11□□□□□ -1.75
CUX1P39880 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.11□□□□□ -1.75
CUX1P39880 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.11□□□□□ -1.75
CUX1P39880 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.11□□□□□ -1.75
CUX1P39880 OR4A45P-201ENST00000529954 901 ntBASIC4.11□□□□□ -1.75
CUX1P39880 TRAV37-201ENST00000553906 342 ntBASIC4.11□□□□□ -1.75
CUX1P39880 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC4.11□□□□□ -1.75
CUX1P39880 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.11□□□□□ -1.75
CUX1P39880 MIR1291-201ENST00000627649 87 ntBASIC4.11□□□□□ -1.75
CUX1P39880 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CUX1P39880 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CUX1P39880 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.1□□□□□ -1.75
CUX1P39880 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CUX1P39880 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CUX1P39880 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CUX1P39880 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CUX1P39880 5S_rRNA.2-201ENST00000391293 112 ntBASIC4.1□□□□□ -1.75
CUX1P39880 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC4.1□□□□□ -1.75
CUX1P39880 DPH3P2-201ENST00000422618 250 ntBASIC4.1□□□□□ -1.75
CUX1P39880 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.1□□□□□ -1.75
CUX1P39880 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.1□□□□□ -1.75
CUX1P39880 RNA5SP281-201ENST00000516504 135 ntBASIC4.1□□□□□ -1.75
CUX1P39880 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.1□□□□□ -1.75
CUX1P39880 CKS1BP7-201ENST00000522230 235 ntBASIC4.1□□□□□ -1.75
CUX1P39880 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.1□□□□□ -1.75
CUX1P39880 AC015712.3-201ENST00000559380 164 ntBASIC4.1□□□□□ -1.75
CUX1P39880 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC4.1□□□□□ -1.75
CUX1P39880 NF1P10-201ENST00000613227 742 ntBASIC4.1□□□□□ -1.75
CUX1P39880 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.1□□□□□ -1.75
CUX1P39880 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CUX1P39880 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CUX1P39880 RAD1P1-201ENST00000231383 813 ntBASIC4.09□□□□□ -1.75
CUX1P39880 RNA5SP456-201ENST00000364002 114 ntBASIC4.09□□□□□ -1.75
CUX1P39880 Y_RNA.226-201ENST00000364337 114 ntBASIC4.09□□□□□ -1.75
CUX1P39880 AC007064.1-201ENST00000412238 351 ntBASIC4.09□□□□□ -1.75
CUX1P39880 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms